CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG31183

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75540.1	KXG31183	AT2G32950.1	17965270

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051309_P001	Maize	nucleus	75.59	80.51
TraesCS6A01G239300.1	Wheat	nucleus	57.29	71.61
TraesCS6D01G221700.1	Wheat	nucleus	57.63	71.43
TraesCS6B01G285200.1	Wheat	nucleus	57.29	71.01
Os02t0646200-01	Rice	nucleus	64.41	70.63
OQU82040	Sorghum	nucleus	54.58	60.75
Solyc01g110180.2.1	Tomato	nucleus	31.19	45.32
CDY41957	Canola	nucleus	31.19	43.4
Bra011879.1-P	Field mustard	nucleus	33.22	41.0
CDY42602	Canola	nucleus	32.2	40.6
KRH51757	Soybean	nucleus	33.56	40.41
KRH51476	Soybean	nucleus	31.53	39.91
Bra010713.1-P	Field mustard	nucleus	32.2	39.42
CDX90306	Canola	nucleus	32.2	39.42
CDY12117	Canola	nucleus	32.2	39.26
AT4G39070.1	Thale cress	cytosol	31.53	38.43
VIT_18s0001g13520.t01	Wine grape	nucleus	39.32	38.28
PGSC0003DMT400079507	Potato	nucleus	32.2	37.7
KRH17384	Soybean	nucleus	35.25	37.68
KRH61078	Soybean	nucleus	33.56	37.22
PGSC0003DMT400009514	Potato	nucleus	37.29	36.91
Solyc04g081020.2.1	Tomato	nucleus	37.29	36.79
CDY13564	Canola	nucleus	37.63	36.63
Bra008204.1-P	Field mustard	nucleus	37.29	36.42
CDY47514	Canola	nucleus	38.64	35.51
Bra015835.1-P	Field mustard	nucleus	38.64	35.51
CDX73178	Canola	nucleus	38.64	35.4
CDY39040	Canola	nucleus	35.25	35.37
EER90373	Sorghum	cytosol	36.27	35.08
KRH29378	Soybean	nucleus	33.9	34.72
CDX85903	Canola	nucleus	36.27	33.54
CDX68124	Canola	nucleus	36.27	33.54
VIT_03s0038g00340.t01	Wine grape	nucleus	34.24	33.44
Bra003748.1-P	Field mustard	nucleus	35.93	33.23
KRH05902	Soybean	nucleus	36.27	32.72
PGSC0003DMT400075652	Potato	nucleus	36.27	32.42
AT1G75540.1	Thale cress	nucleus	36.27	32.33
Solyc12g089240.1.1	Tomato	nucleus	35.93	32.22
KRH24393	Soybean	nucleus	21.69	31.22
EES15831	Sorghum	nucleus	25.42	30.61
KRH60788	Soybean	nucleus	30.85	28.53
EES07119	Sorghum	nucleus	24.75	27.76
EES12431	Sorghum	nucleus	25.08	27.61
EES17867	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	29.15	25.6
EER97079	Sorghum	cytosol	18.31	25.59
KXG19323	Sorghum	nucleus	29.49	23.2
EES02283	Sorghum	nucleus	27.46	23.01

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	EntrezGene:8078881	UniProt:C5XS40	EnsemblPlants:EES07539	ProteinID:EES07539
ProteinID:EES07539.1	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009791
GO:GO:0009987	GO:GO:0046872	InterPro:IPR000315	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832
PANTHER:PTHR31832:SF28	SMART:SM00336	EnsemblPlantsGene:SORBI_3004G301000	unigene:Sbi.19774	UniParc:UPI0001A860AC	RefSeq:XP_002454563.1
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:63965162..63967492

Molecular Weight (calculated)

30469.3 Da

IEP (calculated)

5.325

GRAVY (calculated)

-0.254

Length

295 amino acids

Sequence
(BLAST)

001: MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHRANKLAG KHRRFSLLNP APPSSSGSGS PAQQQAQPPL CDICQEKRGL LFCKEDRAIL CRDCDVSVHT
101: ASELTMRHTR FLLTGVRLSA EPAACPAPPP PPSGSEDENS SGSGSFCCSA GGDASAAPPP SSAAPATSHG SGSDNGSSIS EYLIKTLPGW HVEDFLVDEA
201: AAGAATNIAG VSADASYQGG LARIGGLQDG YGYSAWMAPE QLFYEDSSAA GGARGIREQW VPQMAMYSSS TGLSVAGAGS KRSRATSAAS SYSYW

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.