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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 3
  • plastid 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER88227
EER88355
EER90373
EER93338
EER94971
EER97436
EES06150
EES07119
EES07539
EES07547
EES10837
EES11177
EES12431
EES13281
EES14305
KXG26438
KXG30485
KXG31183
OQU82040
OQU85473
OQU87453

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G32950.1 EER88355 AT1G04400.1 11509693
AT2G32950.1 EES07119 AT1G06040.1 11226162
AT2G32950.1 EES12431 AT1G06040.1 11226162
AT2G32950.1 OQU87453 AT1G53090.1 12887588
AT2G32950.1 OQU87453 AT1G53090.1 18812498
AT2G32950.1 OQU87453 AT1G53090.1 21798944
AT2G32950.1 EER90373 AT1G75540.1 17965270
AT2G32950.1 EES07539 AT1G75540.1 17965270
AT2G32950.1 OQU82040 AT1G75540.1 17965270
AT2G32950.1 EER94971 AT2G18790.1 11752373
AT2G32950.1 EER88227 AT2G24790.1 16339850
AT2G32950.1 OQU85473 AT2G24790.1 16339850
AT2G32950.1 EES07119 AT2G31380.1 11226162
AT2G32950.1 EES12431 AT2G31380.1 11226162
AT2G32950.1 KXG31183 AT2G32950.1 18812498
AT2G32950.1 KXG31183 AT2G32950.1 9755158
AT2G32950.1 EER97436 AT3G13550.1 11877375
AT2G32950.1 EER97436 AT3G13550.1 16844902
AT2G32950.1 KXG26438 AT4G08920.1 11509693
AT2G32950.1 KXG30485 AT4G08920.1 11509693
AT2G32950.1 KXG26438 AT4G08920.1 11752373
AT2G32950.1 KXG30485 AT4G08920.1 11752373
AT2G32950.1 EES06150 AT4G25560.1 12827204
AT2G32950.1 EES07547 AT4G25560.1 12827204
AT2G32950.1 EES11177 AT4G25560.1 12827204
AT2G32950.1 EES13281 AT5G14250.1 14597662
AT2G32950.1 EER93338 AT5G46210.1 16844902
AT2G32950.1 EES14305 AT5G56280.1 14597662
AT2G32950.1 EES10837 AT5G63860.1 19165148
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d018207_P001 Maize nucleus 96.98 97.26
Zm00001d052138_P004 Maize nucleus 94.82 96.06
Os02t0771100-01 Rice nucleus 89.64 90.95
TraesCS6B01G356400.1 Wheat nucleus 86.19 86.44
TraesCS6D01G305800.1 Wheat nucleus 86.62 86.12
TraesCS6A01G326100.1 Wheat nucleus 86.04 85.43
VIT_10s0523g00030.t01 Wine grape nucleus 68.78 79.4
GSMUA_Achr3P20130_001 Banana nucleus 75.83 77.96
Bra021818.1-P Field mustard cytosol 13.09 76.47
GSMUA_AchrUn_... Banana nucleus 68.35 74.33
CDY19171 Canola cytosol 26.62 73.41
Solyc12g005950.1.1 Tomato nucleus 70.07 71.94
AT2G32950.1 Thale cress nucleus 69.06 71.11
PGSC0003DMT400036075 Potato nucleus 66.62 70.9
KRH73341 Soybean nucleus 68.2 70.85
KRH14801 Soybean nucleus 68.78 70.81
CDY12145 Canola nucleus 68.35 70.27
CDY52540 Canola nucleus 68.35 70.16
Bra005541.1-P Field mustard nucleus 67.34 69.96
Solyc11g011980.1.1 Tomato nucleus 67.05 69.35
VIT_12s0059g01420.t01 Wine grape nucleus 67.19 69.08
PGSC0003DMT400034706 Potato nucleus 67.48 68.07
CDX79494 Canola cytosol 8.49 57.28
OQU87453 Sorghum cytosol 31.65 28.65
OQU84205 Sorghum plastid 14.1 19.72
EES19971 Sorghum cytosol 30.79 18.97
Protein Annotations
MapMan:18.4.16MapMan:19.2.2.8.3.4.1Gene3D:2.130.10.10MapMan:26.1.1.3.3.1Gene3D:3.30.40.10UniProt:A0A194YSG7
ncoils:CoilGO:GO:0000003GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654
GO:GO:0006139GO:GO:0006259GO:GO:0006281GO:GO:0006464GO:GO:0006950GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0009605GO:GO:0009628GO:GO:0009640GO:GO:0009641
GO:GO:0009649GO:GO:0009791GO:GO:0009987GO:GO:0010119GO:GO:0016567GO:GO:0016604
GO:GO:0016740GO:GO:0019538GO:GO:0042802GO:GO:0046283GO:GO:0048573GO:GO:0061630
InterPro:IPR001680InterPro:IPR001841InterPro:IPR013083InterPro:IPR015943InterPro:IPR017986EnsemblPlants:KXG31183
ProteinID:KXG31183ProteinID:KXG31183.1PFAM:PF00400PFAM:PF13923ScanProsite:PS00518ScanProsite:PS00678
PFscan:PS50082PFscan:PS50089PFscan:PS50294PANTHER:PTHR44080PANTHER:PTHR44080:SF2SMART:SM00184
SMART:SM00320EnsemblPlantsGene:SORBI_3004G312600SUPFAM:SSF50978SUPFAM:SSF57850UniParc:UPI0003C6AE7AInterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfInterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CSSEG:seg::::
Description
hypothetical protein
Coordinates
chr4:-:64950226..64956807
Molecular Weight (calculated)
77653.2 Da
IEP (calculated)
7.600
GRAVY (calculated)
-0.414
Length
695 amino acids
Sequence
(BLAST)
001: MGDSSVAGAL VPSVPKPEPA RSGDTSVAAA ATTAALALAL PEEAGTRAAS ASPQGPPAED EGPADRDLLC PICMALIKDA FLTACGHSFC YMCIVTHLSN
101: KSDCPCCGHY LTKAQLYPNF LLDKVLKKIS ARQIAKTASP IDQFRCALQQ GNEMGVKELD SLMTLIAEKK RQMEQQESET NMQILLVFLH CLRKQKLEEL
201: NEIQTDLQYI KEDISAVERH RKELYRTKER YSMKLRMLLD EPTAQKMWPS PIDKASCRFP PNSRTPLSAS CPGTLQNKKL DLKAQVSHQG FQRRDALTSS
301: DPPNPPIQSG NVIARKRRVQ AQFNELQEYY LQRRRTGAQA RRQEERDIVA MNREGYHAGL QDFQSVLTTF TRYSRLRVIA ELRHGDLFHS ANIVSSIEFD
401: RDDELFATAG VSKRIKVFEF STVVNEPSDV HCPVVEMATR SKLSCLSWNK YSKNVIASSD YEGIVTVWDV QTRQSVMEYE EHEKRAWSVD FSRTDPSMLV
501: SGSDDCKVKV WCTKQEASVI NIDMKANICS VKYNPGSNFY VAVGSADHHI HYFDLRNPSA PVHIFGGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN
601: CPVRTFRGHK NEKNFVGLSV NNEYIACGSE TNEVFVYHKA ISKPAASHRF VSSDLDDADD DPGSYFISAV CWKSDSPTML TANSQGTIKV LVLAP
Best Arabidopsis Sequence Match ( AT2G32950.1 )
(BLAST)
001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
Arabidopsis Description
COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.