Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400034706 | Potato | nucleus | 96.73 | 94.34 |
| VIT_10s0523g00030.t01 | Wine grape | nucleus | 70.24 | 78.41 |
| GSMUA_Achr3P20130_001 | Banana | nucleus | 69.94 | 69.53 |
| Solyc12g005950.1.1 | Tomato | nucleus | 69.79 | 69.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 64.29 | 67.61 |
| Zm00001d052138_P004 | Maize | nucleus | 68.9 | 67.49 |
| KXG31183 | Sorghum | nucleus, plastid | 69.35 | 67.05 |
| Os02t0771100-01 | Rice | nucleus | 68.3 | 67.01 |
| Zm00001d018207_P001 | Maize | nucleus | 69.05 | 66.96 |
| TraesCS6B01G356400.1 | Wheat | nucleus | 67.11 | 65.08 |
| TraesCS6D01G305800.1 | Wheat | nucleus | 67.11 | 64.52 |
| TraesCS6A01G326100.1 | Wheat | nucleus | 67.11 | 64.43 |
| Solyc11g005190.1.1 | Tomato | cytosol | 14.73 | 27.5 |
| Solyc07g063120.2.1 | Tomato | cytosol | 33.93 | 27.47 |
| Solyc12g013840.1.1 | Tomato | nucleus | 32.44 | 25.29 |
| Solyc08g081990.2.1 | Tomato | cytosol | 32.14 | 20.53 |
| Solyc10g011690.2.1 | Tomato | nucleus | 30.21 | 19.92 |
Protein Annotations
| MapMan:18.4.16 | MapMan:19.2.2.8.3.4.1 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.3.1 | Gene3D:3.30.40.10 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4D603 | PFAM:PF00400 | PFAM:PF13923 | ScanProsite:PS00518 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50089 | PFscan:PS50294 | PANTHER:PTHR44080 | PANTHER:PTHR44080:SF2 |
| SMART:SM00184 | SMART:SM00320 | SUPFAM:SSF50978 | SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc11g011980.1 | EnsemblPlants:Solyc11g011980.1.1 |
| UniParc:UPI0002769DE2 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : |
Description
No Description!
Coordinates
chr11:-:4927052..4931762
Molecular Weight (calculated)
75651.6 Da
IEP (calculated)
7.849
GRAVY (calculated)
-0.474
Length
672 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGEGNLVG VLVPTVNAGE TSAPAAGTEV VVVKTEEEEV DKDILCPICM QIIKDAFLTA CGHSFCYMCI VTHLQNKSDC PCCSHYLTTN HLYPNFLLNK
101: LLMKKSARQM AKSATPVEQL RQAIQQGCEV SVKELDSLLS LLMDKKRKME QEEAETNLQI LLEFLQCLKK QKVEELNEIQ NDLQYIKEDI NAVEKRRIEL
201: HRTRGRYSAK MRTLVDDSSA MTVRPPLRDK GSGAIVSSPV NLQEQGRAGT SQTRNTDTRA PRNSQIVQRK DDNHGGSDSQ DLNQPGKSLA RKRRVHAQFN
301: ELQDCYLQKR RYWARQSQKQ GERVANIKNR EGYSAGLEDF QSVLSTFTRY SRLRVVAELR HSDIFHSANI VSSIEFDRDD ELFATAGVSR RIKVFEFSSV
401: VNKPADAQCP VVEMSTRSKL SCLSWNNYTK NHLASSDYEG IVTVWDVTTR QSVMEYEEHE KRAWSVDFCR TEPSMLVSGS DDCKVKVWCT KQEASVLTID
501: MKANICSVKY NPGSSAHIAV GSADHHVHYY DLRNISQPLY IFSGHRKAVS YVKFLSNYEL ASASTDSTLR LWDVNENVPL RTFKGHTNEK NFVGLTVNSE
601: YLACGSETNE VFVYHKAISK PAARYRFVSD DQNDPDGDMG SFFISAVCWK RDSPTIVTAN SRGTIKALVL AA
101: LLMKKSARQM AKSATPVEQL RQAIQQGCEV SVKELDSLLS LLMDKKRKME QEEAETNLQI LLEFLQCLKK QKVEELNEIQ NDLQYIKEDI NAVEKRRIEL
201: HRTRGRYSAK MRTLVDDSSA MTVRPPLRDK GSGAIVSSPV NLQEQGRAGT SQTRNTDTRA PRNSQIVQRK DDNHGGSDSQ DLNQPGKSLA RKRRVHAQFN
301: ELQDCYLQKR RYWARQSQKQ GERVANIKNR EGYSAGLEDF QSVLSTFTRY SRLRVVAELR HSDIFHSANI VSSIEFDRDD ELFATAGVSR RIKVFEFSSV
401: VNKPADAQCP VVEMSTRSKL SCLSWNNYTK NHLASSDYEG IVTVWDVTTR QSVMEYEEHE KRAWSVDFCR TEPSMLVSGS DDCKVKVWCT KQEASVLTID
501: MKANICSVKY NPGSSAHIAV GSADHHVHYY DLRNISQPLY IFSGHRKAVS YVKFLSNYEL ASASTDSTLR LWDVNENVPL RTFKGHTNEK NFVGLTVNSE
601: YLACGSETNE VFVYHKAISK PAARYRFVSD DQNDPDGDMG SFFISAVCWK RDSPTIVTAN SRGTIKALVL AA
001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
Arabidopsis Description
COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.