Factsheet for PGSC0003DMT400034706

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g011980.1.1	Tomato	nucleus	94.34	96.73
VIT_10s0523g00030.t01	Wine grape	nucleus	68.36	78.24
GSMUA_Achr3P20130_001	Banana	nucleus	68.21	69.53
PGSC0003DMT400036075	Potato	nucleus	65.46	69.07
Zm00001d018207_P001	Maize	nucleus	68.07	67.68
Zm00001d052138_P004	Maize	nucleus	67.2	67.49
KXG31183	Sorghum	nucleus, plastid	68.07	67.48
GSMUA_AchrUn_...	Banana	nucleus	62.41	67.29
Os02t0771100-01	Rice	nucleus	66.76	67.15
TraesCS6B01G356400.1	Wheat	nucleus	66.18	65.8
TraesCS6D01G305800.1	Wheat	nucleus	66.18	65.24
TraesCS6A01G326100.1	Wheat	nucleus	65.89	64.86
PGSC0003DMT400015453	Potato	cytosol	14.37	26.76
PGSC0003DMT400039600	Potato	cytosol	31.64	25.12
PGSC0003DMT400049874	Potato	nucleus	29.75	20.22
PGSC0003DMT400031699	Potato	cytosol	18.43	14.46

Protein Annotations

EntrezGene:102605430	MapMan:18.4.16	MapMan:19.2.2.8.3.4.1	Gene3D:2.130.10.10	MapMan:26.1.1.3.3.1	Gene3D:3.30.40.10
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR001841
InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1B157	PFAM:PF00400	PFAM:PF13923
EnsemblPlantsGene:PGSC0003DMG400013334	PGSC:PGSC0003DMG400013334	EnsemblPlants:PGSC0003DMT400034706	ScanProsite:PS00518	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50089	PFscan:PS50294	PANTHER:PTHR44080	PANTHER:PTHR44080:SF2	SMART:SM00184	SMART:SM00320
SUPFAM:SSF50978	SUPFAM:SSF57850	UniParc:UPI000296FA7B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006352383.2	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

Ubiquitin ligase protein cop1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013334]

Coordinates

chr11:+:793966..800249

Molecular Weight (calculated)

77393.3 Da

IEP (calculated)

6.279

GRAVY (calculated)

-0.470

Length

689 amino acids

Sequence
(BLAST)

001: MGGGGERNSM GVLVPTVNAG ETSAPAGAET EAAVVGTEVV VVTERVAEEE EEEEEEVDKD ILCPICMQII KDAFLTACGH SFCYMCIVTH LQNKSDCPCC
101: SHYLTTNHLY PNFLLNKLLM KKSARQMAKS ATPVEQLRQA IQQGCEVSVK ELDSLLSLLM DKKRKMEQEE AETNLQILLE FLQCLKKQKV DELNEIQNDL
201: QYIKEDINAV EKRRIELYRT RGRYSAKMRT LVDDSSAMTV RPPLRDKGSG AIVSSPVNLQ EQGRAGTSQT RNTDTRAPQN PQIVQRKDDN QGGSDSQDPN
301: QPGKSLARKR RVHAQFNELQ DCYLQKRRYW ARQSQKQGER VANIMNRVGY SAGLEDFQSV LSTFTRYSSL RVVAELRHSD IFHSANIVSS IEFDRDDELF
401: ATAGVSRRIK VFEFSSVVNE PADAQCPIVE MSTRSKLSCL SWNNYTKNHL ASSDYEGIVT VWDVTTRQSV MEYEEHEKRA WSVDFCRTEP SMLVSGSDDC
501: KVKVWCTNQE ASVLTIDMKA NICSVKYNPG SSAHIAVGSA DHHVHYYDLR NISQPLYIFS GHRKAVSYVK FLSNYELASA STDSTLRLWD VNENVPLRTF
601: KGHTNEKNFV GLTVNSEYLA CGSETNEVFV YHKAISKPAA WHRFVSDDQN DPDGDMGSFF ISAVCWKRDS PTIVTANSQG TIKALVLAA

Best Arabidopsis Sequence Match ( AT2G32950.1 )
(BLAST)

001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA

Arabidopsis Description

COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.