Factsheet for PGSC0003DMT400031699

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400026065
PGSC0003DMT400026068

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11110.1	PGSC0003DMT400026065	AT5G15850.1	16854975
AT4G11110.1	PGSC0003DMT400026068	AT5G15850.1	16854975

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g081990.2.1	Tomato	cytosol	93.62	78.14
VIT_02s0025g01130.t01	Wine grape	cytosol	43.62	46.31
KRH41290	Soybean	nucleus	42.48	36.07
KRH60015	Soybean	plasma membrane	34.4	36.0
KRH27856	Soybean	nucleus	43.51	34.02
KRH77627	Soybean	nucleus	43.28	33.66
AT4G11110.1	Thale cress	nucleus	37.59	31.85
CDX86817	Canola	nucleus	34.28	31.06
GSMUA_Achr11P...	Banana	cytosol	28.82	30.7
GSMUA_Achr1P28310_001	Banana	nucleus	35.42	30.49
CDY40851	Canola	nucleus	34.05	30.42
Bra035252.1-P	Field mustard	nucleus	33.83	30.31
EES19971	Sorghum	cytosol	36.22	28.19
Zm00001d039072_P005	Maize	cytosol	35.42	27.72
PGSC0003DMT400049874	Potato	nucleus	32.0	27.71
GSMUA_Achr8P05740_001	Banana	nucleus	33.71	27.61
Os05t0571000-01	Rice	cytosol	35.54	27.27
Zm00001d009617_P017	Maize	mitochondrion	35.54	27.23
TraesCS1D01G417600.1	Wheat	cytosol	35.31	24.37
HORVU1Hr1G090080.3	Barley	cytosol	35.31	23.22
PGSC0003DMT400039600	Potato	cytosol	21.64	21.89
PGSC0003DMT400034706	Potato	nucleus	14.46	18.43
VIT_02s0025g01110.t01	Wine grape	cytosol, plastid	4.67	17.01
PGSC0003DMT400036075	Potato	nucleus	12.53	16.85
PGSC0003DMT400015453	Potato	cytosol	5.01	11.89

Protein Annotations

MapMan:18.4.16	Gene3D:2.130.10.10	MapMan:26.1.1.3.3.2	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:Kinase-like_dom_sf
UniProt:M1AW27	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400012163	PGSC:PGSC0003DMG400012163	EnsemblPlants:PGSC0003DMT400031699	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44218	PANTHER:PTHR44218:SF2	InterPro:Prot_kinase_dom	SMART:SM00220
SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF56112	UniParc:UPI000295597F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

Ubiquitin ligase protein cop1 [Source:PGSC_GENE;Acc:PGSC0003DMG400012163]

Coordinates

chr8:-:55641651..55649670

Molecular Weight (calculated)

98583.3 Da

IEP (calculated)

6.549

GRAVY (calculated)

-0.504

Length

878 amino acids

Sequence
(BLAST)

001: MDEAVDEAIG DEVNGLDAID GRQLRSKEMD YTLRSGNSIM LQSHEVVTLG EGDHYQTTPN LYTGILDRKN LDRIGSSEHA SASPRCMNDA GVMVEELTLR
101: NYNGKNLAVV GTLGNKEHIR PNQWFYQLAG GSACASSHGE AAYRDRCRTS SGLWEEEDGD TLFTGFLNQN QNTLNESRNL GGENLQNNGD EAVLNNVLPS
201: SEGIRTKIIS KSGFSEYFVK STLKGKGIIC KTQLPRVSAS ESRGQIHSQC TNASSTVASM DAFINPNVYH DGISLRERMK AGGNKLNKDE GLYIFKQVLG
301: LVDFAHSQGI SVQDLRPSCF KLLRANQVVY SGASVRTQLT EYVVDRGVSQ SENNQKERSS AGKNISSLVD PCVKKQKFSE DMHLKMKWPQ YPFKSGHKSA
401: SRNTKLNAAQ GYGDESNEED CLKKEPNNLS KFRLPQLSIM SKPSLTSMSF KFEEKWYTSP EQFTEGGCTF SSNIYCLGVL LFELLASFDC ESSHAAAMLD
501: LRHRILPSCF LSEHPKEAGF CLWLLHPEPS ARPTTREILQ SGVIAKIKEL PGDVSLSSIH EEESESELLL YFLMSLKDQK QKDATKLVEE LRCIEADVQE
601: VQRRRSSKGL FPSSHPQSLV QRQTRFIQKG ASSSDVYPKL PPVCENGTRL IKNIKQLESA YSSMRSNIQP SDDVAMVRRT EELFNNQENF VSTENDKEKY
701: RPTDRLGGFF DGLCKYGRYS KFRARGILRN ADLNNFANVI CSLSFDRDEE YLAAGGVSKK IKVFEYHALF NDSVDIHYPI IEMSNKSKLS CICWNNYIRN
801: YLATTDYDGA VKLWDVSTGQ AFLHLTEHNE RAWSVDFSRV DPIKLASGSD DHLVKLWSIN EACFPLLMLF YIVPPCFD

Best Arabidopsis Sequence Match ( AT4G11110.1 )
(BLAST)

0001: MMDEGSVGDV SRIDEADVAH LQFKNSEQSF KPENIEVREV KEVQVQREAG SPDCSYGVIA DFLDGKNGGD HVELIGNEPC SSRQNTNDEG DVVEELTVKT
0101: CEGSSMAIVG RPSSRARLEM NRSQFLHRFP LDGDLPGSSS MSKKVIDRGT VSILRNAGKM SLPETSNGQL AIIAVNGEAN EHLTNVERNP VPVEALSHEG
0201: IKTKMLSQSG FSQFFVRKTL KGKGVTFRGP PNNRSKARNM DQQTVASSGS ALVIANTSAK ISSSIPLAAY DGLPCLPSNT SKPSSCANPS DTHRGCGGEG
0301: LSLREWLKSE RQEVNKAECM YIFRQIVDHV DCSHSQGVVL CDLRPSSFKI FKENAVKYVV SGSQRESFDS NMNKETLSQL ENPLVRRRLG DTSSLSIPAK
0401: KQKSSGPSSR QWPMFQRAGG VNIQTENNDG AIQEFHFRSS QPHCSTVACP FTSVSEQLEE KWYASPEELR GDMRSASSNI YSLGILLYEL LSQFQCERAR
0501: EAAMSDIRHR ILPPKFLSEN PKEAGFCLWL LHPESSCRPS TRDILQSEVV NGIPDLYAEG LSLSIEQEDT ESELLQHFLF LSQEKRQKHA GNLMEEIASV
0601: EADIEEIVKR RCAIGPPSLE EASSSSPASS VPEMRLIRNI NQLESAYFAA RIDAHLPEAR YRLRPDRDLL RNSDNTVAEV ENSETWSSDD RVGAFFDGLC
0701: KYARYSKFET RGVLRTSELN NTSNVICSLG FDRDEDYFAT AGVSKKIKIY EFNSLFNESV DIHYPAIEMP NRSKLSGVCW NNYIRNYLAS SDYDGIVKLW
0801: DVTTGQAISH FIEHEKRAWS VDFSEACPTK LASGSDDCSV KLWNINERNC LGTIRNIANV CCVQFSPQSS HLLAFGSSDF RTYCYDLRNL RTPWCILSGH
0901: NKAVSYAKFL DNETLVTAST DNTLKLWDLK KTTHGGLSTN ACSLTFGGHT NEKNFVGLST SDGYIACGSE TNEVYAYHRS LPMPITSYKF GSIDPISGKE
1001: IEEDNNLFVS SVCWRKRSNM VVSASSNGSI KVLQLV

Arabidopsis Description

SPA2Protein SPA1-RELATED 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T014]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.