Factsheet for VIT_02s0025g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0083g00640.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11110.1	VIT_14s0083g00640.t01	AT5G15850.1	16854975

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60015	Soybean	plasma membrane	80.91	23.24
GSMUA_Achr11P...	Banana	cytosol	75.52	22.09
KRH41290	Soybean	nucleus	81.33	18.96
VIT_10s0523g00030.t01	Wine grape	nucleus	47.3	18.94
CDY40851	Canola	nucleus	74.69	18.31
CDX86817	Canola	nucleus	73.03	18.16
KRH27856	Soybean	nucleus	83.4	17.9
Bra035252.1-P	Field mustard	nucleus	72.61	17.86
GSMUA_Achr1P28310_001	Banana	nucleus	75.52	17.84
KRH77627	Soybean	nucleus	83.4	17.8
Solyc08g081990.2.1	Tomato	cytosol	77.59	17.78
AT4G11110.1	Thale cress	nucleus	76.35	17.76
VIT_12s0059g01420.t01	Wine grape	nucleus	48.96	17.46
GSMUA_Achr8P05740_001	Banana	nucleus	77.18	17.35
VIT_15s0046g01310.t01	Wine grape	nucleus	76.76	17.26
Os05t0571000-01	Rice	cytosol	77.18	16.26
EES19971	Sorghum	cytosol	74.27	15.87
Zm00001d039072_P005	Maize	cytosol	73.44	15.78
Zm00001d009617_P017	Maize	mitochondrion	74.27	15.62
VIT_12s0028g03570.t01	Wine grape	cytosol	56.85	15.34
VIT_19s0014g02660.t01	Wine grape	nucleus	56.43	14.91
TraesCS1D01G417600.1	Wheat	cytosol	77.59	14.7
HORVU1Hr1G090080.3	Barley	cytosol	77.59	14.01
VIT_16s0050g00020.t01	Wine grape	cytosol	36.1	11.3
PGSC0003DMT400031699	Potato	cytosol	17.01	4.67
VIT_02s0025g01130.t01	Wine grape	cytosol	2.9	0.85

Protein Annotations

MapMan:18.4.16	Gene3D:2.130.10.10	ProteinID:CCB58234	ProteinID:CCB58234.1	UniProt:F6HUR8	EMBL:FN596251
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR44218	PANTHER:PTHR44218:SF2	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC60711	UniParc:UPI0002108EA0
ArrayExpress:VIT_02s0025g01110	EnsemblPlantsGene:VIT_02s0025g01110	EnsemblPlants:VIT_02s0025g01110.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002271391	RefSeq:XP_002271391.2	:	:

Description

No Description!

Coordinates

chr2:-:1066623..1076204

Molecular Weight (calculated)

26298.9 Da

IEP (calculated)

6.604

GRAVY (calculated)

-0.188

Length

241 amino acids

Sequence
(BLAST)

001: MAFLWDASTG QGLSQYIDHQ KRAWSVDFSR VDPKKLASGS DDCSVKLWSI NEKNCLGTIR NIANVCCVQF SAHSSHLLAF GSADYKTYCY DLRNAKSPWC
101: ILAGHDKAVS YVKFLDAETL VSASTDNSLK IWDLNQTSST GLSMNACSLT LSGHTNEKNF VGLSVADGYV TCGSETNEVY AYHRSLPMPI TSHKFGSIDP
201: ISGKETDDDN GQFVSSVCWR GKSNMVVAAN STGCIKVLEM V

Best Arabidopsis Sequence Match ( AT4G11110.1 )
(BLAST)

0001: MMDEGSVGDV SRIDEADVAH LQFKNSEQSF KPENIEVREV KEVQVQREAG SPDCSYGVIA DFLDGKNGGD HVELIGNEPC SSRQNTNDEG DVVEELTVKT
0101: CEGSSMAIVG RPSSRARLEM NRSQFLHRFP LDGDLPGSSS MSKKVIDRGT VSILRNAGKM SLPETSNGQL AIIAVNGEAN EHLTNVERNP VPVEALSHEG
0201: IKTKMLSQSG FSQFFVRKTL KGKGVTFRGP PNNRSKARNM DQQTVASSGS ALVIANTSAK ISSSIPLAAY DGLPCLPSNT SKPSSCANPS DTHRGCGGEG
0301: LSLREWLKSE RQEVNKAECM YIFRQIVDHV DCSHSQGVVL CDLRPSSFKI FKENAVKYVV SGSQRESFDS NMNKETLSQL ENPLVRRRLG DTSSLSIPAK
0401: KQKSSGPSSR QWPMFQRAGG VNIQTENNDG AIQEFHFRSS QPHCSTVACP FTSVSEQLEE KWYASPEELR GDMRSASSNI YSLGILLYEL LSQFQCERAR
0501: EAAMSDIRHR ILPPKFLSEN PKEAGFCLWL LHPESSCRPS TRDILQSEVV NGIPDLYAEG LSLSIEQEDT ESELLQHFLF LSQEKRQKHA GNLMEEIASV
0601: EADIEEIVKR RCAIGPPSLE EASSSSPASS VPEMRLIRNI NQLESAYFAA RIDAHLPEAR YRLRPDRDLL RNSDNTVAEV ENSETWSSDD RVGAFFDGLC
0701: KYARYSKFET RGVLRTSELN NTSNVICSLG FDRDEDYFAT AGVSKKIKIY EFNSLFNESV DIHYPAIEMP NRSKLSGVCW NNYIRNYLAS SDYDGIVKLW
0801: DVTTGQAISH FIEHEKRAWS VDFSEACPTK LASGSDDCSV KLWNINERNC LGTIRNIANV CCVQFSPQSS HLLAFGSSDF RTYCYDLRNL RTPWCILSGH
0901: NKAVSYAKFL DNETLVTAST DNTLKLWDLK KTTHGGLSTN ACSLTFGGHT NEKNFVGLST SDGYIACGSE TNEVYAYHRS LPMPITSYKF GSIDPISGKE
1001: IEEDNNLFVS SVCWRKRSNM VVSASSNGSI KVLQLV

Arabidopsis Description

SPA2Protein SPA1-RELATED 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T014]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.