Factsheet for VIT_19s0014g02660.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0059g01420.t01
VIT_14s0083g00640.t01
VIT_19s0014g02660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53090.1	VIT_19s0014g02660.t01	AT1G53090.1	18812498
AT1G53090.1	VIT_12s0059g01420.t01	AT2G32950.1	12887588
AT1G53090.1	VIT_12s0059g01420.t01	AT2G32950.1	18812498
AT1G53090.1	VIT_12s0059g01420.t01	AT2G32950.1	21798944
AT1G53090.1	VIT_14s0083g00640.t01	AT5G15850.1	16854975
AT1G53090.1	VIT_14s0083g00640.t01	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50512	Canola	nucleus	55.92	69.11
KRH27246	Soybean	plastid	68.64	69.02
Solyc07g063120.2.1	Tomato	cytosol	62.39	68.55
KRH22086	Soybean	plastid	67.54	67.99
KRH55271	Soybean	cytosol	9.43	67.72
CDX97654	Canola	nucleus, plastid	58.88	67.55
Bra021100.1-P	Field mustard	nucleus	57.57	67.31
Solyc12g013840.1.1	Tomato	nucleus	63.6	67.29
Bra027259.1-P	Field mustard	nucleus, plastid	58.44	67.13
CDY20122	Canola	nucleus	57.89	67.01
PGSC0003DMT400039600	Potato	cytosol	63.71	66.94
CDX98548	Canola	nucleus, plastid	58.22	66.88
CDY21834	Canola	nucleus, plastid	57.89	66.75
AT1G53090.1	Thale cress	nucleus	58.0	66.62
KRH26155	Soybean	cytosol	57.57	66.62
AT3G15354.3	Thale cress	nucleus	61.4	66.27
KRH55275	Soybean	cytosol	58.22	66.04
Bra038098.1-P	Field mustard	nucleus	22.59	63.38
GSMUA_Achr3P31750_001	Banana	nucleus	51.86	61.59
CDY25880	Canola	nucleus	31.03	61.39
VIT_12s0028g03570.t01	Wine grape	cytosol	59.87	61.14
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	5.15	61.04
TraesCS3A01G284700.2	Wheat	cytosol	51.32	60.39
TraesCS3D01G284500.2	Wheat	cytosol	50.66	60.0
TraesCS3B01G318600.1	Wheat	cytosol	50.55	59.95
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	49.23	58.77
OQU87453	Sorghum	cytosol	49.23	58.46
Zm00001d043592_P004	Maize	cytosol	50.66	58.41
GSMUA_Achr1P13700_001	Banana	nucleus	48.9	57.92
Zm00001d011746_P002	Maize	nucleus	50.11	57.2
VIT_02s0025g01110.t01	Wine grape	cytosol, plastid	14.91	56.43
Os01t0725800-01	Rice	nucleus	38.71	56.21
VIT_10s0523g00030.t01	Wine grape	nucleus	24.12	36.54
VIT_12s0059g01420.t01	Wine grape	nucleus	24.89	33.58
VIT_15s0046g01310.t01	Wine grape	nucleus	33.88	28.82
VIT_02s0025g01130.t01	Wine grape	cytosol	21.71	23.94
VIT_16s0050g00020.t01	Wine grape	cytosol	12.94	15.32

Protein Annotations

EntrezGene:100258898	wikigene:100258898	MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	ProteinID:CCB46338
ProteinID:CCB46338.1	ncoils:Coil	UniProt:F6H242	EMBL:FN595229	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100258898	wikigene:LOC100258898
PFAM:PF00069	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50011	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44218	PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom	SMART:SM00220	SMART:SM00320
SUPFAM:SSF50978	SUPFAM:SSF56112	TIGR:TC59809	UniParc:UPI0002109D58	ArrayExpress:VIT_19s0014g02660	EnsemblPlantsGene:VIT_19s0014g02660
EnsemblPlants:VIT_19s0014g02660.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002282441	RefSeq:XP_002282441.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr19:-:2720510..2732104

Molecular Weight (calculated)

102054.0 Da

IEP (calculated)

6.179

GRAVY (calculated)

-0.445

Length

912 amino acids

Sequence
(BLAST)

001: MEGSSESGWR NSDISRGLNV SIVSHGRNPR QRHANRIGLS GGASHDSGFI SGRKERDHVL SSHTKNHKNQ VGISQVCDDD VALDPFVRAI EWGDVSLRHW
101: LDKPERRVDA LECLHIFTQI AEIVNAAHSQ GVVVNNVRPS CFVMSSFNHV SFIESVSCSD SGSDSLEDGS NSHTEEDNGL SSLPDDLHLR KSRSGNEDFL
201: PTIMPTNASQ IVLSETSCMQ SSSVSATHVT LVEDREEYKS TDRRSVEQSE EKKQTFPMKE ILLMETNWYT SPEEISGAQT SCASDIYQLG VLLFELFCTF
301: SSREEKSRTM SCLRHRVLPP QLLLKWPKEA SFCLWLLHPE PSSRPKISEL FQSEFLTEPR DKMEEREAAI ELRERIEEQE LLLEFLLLMQ QRKQGAVDKL
401: QDTISFLSSD IEEVGKQQAT LRKRGGSYQE LVKDDQSTSD LSPMDVDENE DSTSVRSSKR FRQGVHHIKE LDDTLNNGQK LGMNAENPEI LISKSSRLMK
501: NFKKLESAYL LTRRKPTKPS GKPSNKISPP SSNGRGSIVV TERSSVNNLA SKDQYNEHGQ SGWINPFLDG LCKYLSFSKL KVKADLKQGD LLNSSNLVCS
601: VSFDRDGELF ATAGVNKKIK VFECNSILNE DRDIHYPLVE MACRSKLSSI CWNSYIKSQI ASSNFEGVVQ VWDVTRSQVL TEMREHERRV WSIDYSLADP
701: TMLASGSDDG SVKLWSINQA ILFLHLVDGV SVGTIKTKAN VCCVQFTPDS GRYLAFGSAD HRIYYYDLRN SKIPLCTLLG HNKTVSYVKF VDSTHLVSAS
801: TDNTLKLWDL SMCTARVLEG PLQSFTGHQN VKNFVGLSVS DGYIATGSEA NEVVIYHKAF PMPALTFKFN SMDSDHESDD SAQFISSVCW RGQSSTLVAA
901: NSAGNIKILE MV

Best Arabidopsis Sequence Match ( AT3G15354.3 )
(BLAST)

001: MEGSSNSNSR GFNTSGVSDR NTEFLPVERL TTRSKPSSHV DEYVRSLFGS TSTHKSGEDD SLGIDPFVRS LEWGDVSLRQ WLDKPERSVD VFECLHVFRQ
101: IVEIVNAAHS QGIVVHNVRP SCFVMSSFNH VSFIESASCS DSGSDSLEDG PISQKEIGSS RREEAVSKAI AIEEKGVYNK LLERKIEKLE EEKTQPFPMK
201: HILAMETSWY TSPEEDFGSS STCASDVYRL GVLLFELFCP VPSREEKSRT MSSLRHRVLP PQILLKCPKE ASFCLWLLHP EPTCRPSMSD LLQSEFITEP
301: RDNLEEREAA IELRDRIEEQ ESLLEFLLLI QQRKQESAYR LQDTVSLLSS DIEQVVKRQL ILKKRGSSLS DFSKDDHQYT SGQPLMSFQA NEEPSAFLAS
401: RKRVRQGILA LENGVEVDEE SQGSTLLESS RLMRNFKKLE SVYFLTRRRQ MKAAASGKSL TRHSPLSSEN GRGSMIVSEK SSVSNPVAPK AFFNNDSRQG
501: GWIDPFLEGL CRYLSFSQLR VKADLKQGDL LNSSNLVCAL AFDREGELFA TAGVNKKIKI FECNSIVNDN RDIHYPVVEL AGRSKLSSLC WNSYIKSQIA
601: SSNFDGVVQI WDVARSQLVT EMKEHKKRVW SIDISSADPT LLASGSDDGT VKLWSINQGV SIGTIKTKAN VCCVQFPSDS GRSLAFGSAD HKVYYYDLRN
701: PKIPLCTMIG HSKTVSYVKF VDSSTLVSSS TDNTLKLWDL SMSASGINES PLHSFTGHTN LKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVMSYMFN
801: NTDSMSGLEV DDASQFISSI CWRGQSSTLV AANSNGNIKI LEMMT

Arabidopsis Description

SPA3Protein SPA1-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.