CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG31183
OQU87453

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53090.1	OQU87453	AT1G53090.1	18812498
AT1G53090.1	KXG31183	AT2G32950.1	12887588
AT1G53090.1	KXG31183	AT2G32950.1	18812498
AT1G53090.1	KXG31183	AT2G32950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043592_P004	Maize	cytosol	95.7	92.92
Zm00001d011746_P002	Maize	nucleus	93.88	90.24
TraesCS3D01G284500.2	Wheat	cytosol	86.2	85.97
TraesCS3B01G318600.1	Wheat	cytosol	86.07	85.96
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	85.16	85.6
TraesCS3A01G284700.2	Wheat	cytosol	85.16	84.39
Os01t0725800-01	Rice	nucleus	65.49	80.1
GSMUA_Achr3P31750_001	Banana	nucleus	60.03	60.03
KRH55271	Soybean	cytosol	9.64	58.27
CDY50512	Canola	nucleus	53.52	55.69
Solyc07g063120.2.1	Tomato	cytosol	58.59	54.22
Bra038098.1-P	Field mustard	nucleus	22.79	53.85
Bra021100.1-P	Field mustard	nucleus	54.56	53.72
AT1G53090.1	Thale cress	nucleus	55.34	53.53
CDY20122	Canola	nucleus	54.82	53.43
CDX98548	Canola	nucleus, plastid	55.21	53.4
Bra027259.1-P	Field mustard	nucleus, plastid	54.69	52.9
CDX97654	Canola	nucleus, plastid	54.69	52.83
GSMUA_Achr1P13700_001	Banana	nucleus	52.73	52.6
CDY21834	Canola	nucleus, plastid	54.04	52.47
KRH26155	Soybean	cytosol	53.26	51.9
KRH55275	Soybean	cytosol	53.12	50.75
Solyc12g013840.1.1	Tomato	nucleus	56.9	50.7
AT3G15354.3	Thale cress	nucleus	55.6	50.53
PGSC0003DMT400039600	Potato	cytosol	57.03	50.46
VIT_12s0028g03570.t01	Wine grape	cytosol	58.07	49.94
KRH27246	Soybean	plastid	58.33	49.39
VIT_19s0014g02660.t01	Wine grape	nucleus	58.46	49.23
KRH22086	Soybean	plastid	57.68	48.9
CDY25880	Canola	nucleus	27.99	46.64
KXG31183	Sorghum	nucleus, plastid	28.65	31.65
EES19971	Sorghum	cytosol	38.41	26.15
OQU84205	Sorghum	plastid	12.89	19.92

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	UniProt:A0A1W0VZA3	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:Kinase-like_dom_sf	EnsemblPlants:OQU87453	ProteinID:OQU87453	ProteinID:OQU87453.1
PFAM:PF00400	PFAM:PF07714	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50011	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44218	PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom	SMART:SM00320	EnsemblPlantsGene:SORBI_3003G282000
SUPFAM:SSF50978	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	UniParc:UPI0009DC90CC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:61679845..61685295

Molecular Weight (calculated)

85495.5 Da

IEP (calculated)

5.410

GRAVY (calculated)

-0.403

Length

768 amino acids

Sequence
(BLAST)

001: MEPSRGAAGG GRRWGDAEAE AEGDAADEGR RGEDGGEAAE CVHVFRQVAE AVAVAHAQGV AVGSARPSCF VVSPPFARVA FIESASGSDA SGSCSGSDAS
101: EDADRDASPP RRRDGAGRGE ERAGKSFPLK SVLAMELNWY TSPEEADDSA ATFASDVYRL GVLLFELFCT FETMEDKMRA MANLRHRVLP PQLLLKWPKE
201: ASFCQLLMHP VPETRPKMSE VLQSEFLNQS RNSLEEREAA LRLREEIEEQ ELLLDFLQQL QKRKQDIADS LQDTVAFLSS DINEVLHQQS ALGHCVNFST
301: DLDKEVCSGT VEDQSDCGSR KRFRPELQGV DMEENNRTVE ECSRTVPSSE LIQESVLSKS SRLMKNFKKL ETAYFLTRSK LAKQAGNQIS NHQIVKRATG
401: SAIGTEGSSI DDFSLERQYG RRQRGWVNSF LEGLCKYLSF SKLKVRAELK HCDLLNSSNL VCSVGFDRDR EFFATAGVNK KIKVFDYNMI VNEHRDIHYP
501: VVEMSNRSKL SCICWNSYMK SHIASSDFEG IVQVWDVTRS QVFVEMREHE RRVWSVDFSI VDPTKLVSGS DDGSVKLWDM NQAGSIGTIR TRANVCSVQF
601: QPDTSRSIAI GSADHKIYCY DLRNIRAPYC TLVGHTKTVS YVKYLDASTI VSASTDNSLK LWDLSMSRGR IIDSPIQTFT GHTNTKNFVG LSISDGYIAT
701: GSETNEVFVY HKEFPMPVLA YKFSVTDPIS GQEIDDQSQF ISCVCWRGQS STLLSANSSG NIKILEMD

Best Arabidopsis Sequence Match ( AT3G15354.3 )
(BLAST)

001: MEGSSNSNSR GFNTSGVSDR NTEFLPVERL TTRSKPSSHV DEYVRSLFGS TSTHKSGEDD SLGIDPFVRS LEWGDVSLRQ WLDKPERSVD VFECLHVFRQ
101: IVEIVNAAHS QGIVVHNVRP SCFVMSSFNH VSFIESASCS DSGSDSLEDG PISQKEIGSS RREEAVSKAI AIEEKGVYNK LLERKIEKLE EEKTQPFPMK
201: HILAMETSWY TSPEEDFGSS STCASDVYRL GVLLFELFCP VPSREEKSRT MSSLRHRVLP PQILLKCPKE ASFCLWLLHP EPTCRPSMSD LLQSEFITEP
301: RDNLEEREAA IELRDRIEEQ ESLLEFLLLI QQRKQESAYR LQDTVSLLSS DIEQVVKRQL ILKKRGSSLS DFSKDDHQYT SGQPLMSFQA NEEPSAFLAS
401: RKRVRQGILA LENGVEVDEE SQGSTLLESS RLMRNFKKLE SVYFLTRRRQ MKAAASGKSL TRHSPLSSEN GRGSMIVSEK SSVSNPVAPK AFFNNDSRQG
501: GWIDPFLEGL CRYLSFSQLR VKADLKQGDL LNSSNLVCAL AFDREGELFA TAGVNKKIKI FECNSIVNDN RDIHYPVVEL AGRSKLSSLC WNSYIKSQIA
601: SSNFDGVVQI WDVARSQLVT EMKEHKKRVW SIDISSADPT LLASGSDDGT VKLWSINQGV SIGTIKTKAN VCCVQFPSDS GRSLAFGSAD HKVYYYDLRN
701: PKIPLCTMIG HSKTVSYVKF VDSSTLVSSS TDNTLKLWDL SMSASGINES PLHSFTGHTN LKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVMSYMFN
801: NTDSMSGLEV DDASQFISSI CWRGQSSTLV AANSNGNIKI LEMMT

Arabidopsis Description

SPA3Protein SPA1-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.