CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93763
KRH01455
KRH14801
KRH18308
KRH22086
KRH26155
KRH27246
KRH45169
KRH55271
KRH55275
KRH73341

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53090.1	KRH22086	AT1G53090.1	18812498
AT1G53090.1	KRH26155	AT1G53090.1	18812498
AT1G53090.1	KRH27246	AT1G53090.1	18812498
AT1G53090.1	KRH55271	AT1G53090.1	18812498
AT1G53090.1	KRH55275	AT1G53090.1	18812498
AT1G53090.1	KRH14801	AT2G32950.1	12887588
AT1G53090.1	KRH73341	AT2G32950.1	12887588
AT1G53090.1	KRH14801	AT2G32950.1	18812498
AT1G53090.1	KRH73341	AT2G32950.1	18812498
AT1G53090.1	KRH14801	AT2G32950.1	21798944
AT1G53090.1	KRH73341	AT2G32950.1	21798944
AT1G53090.1	KRG93763	AT5G15850.1	16854975
AT1G53090.1	KRH01455	AT5G15850.1	16854975
AT1G53090.1	KRH18308	AT5G15850.1	16854975
AT1G53090.1	KRH45169	AT5G15850.1	16854975
AT1G53090.1	KRG93763	AT5G15850.1	18812498
AT1G53090.1	KRH01455	AT5G15850.1	18812498
AT1G53090.1	KRH18308	AT5G15850.1	18812498
AT1G53090.1	KRH45169	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	34.65	57.14
KRH26155	Soybean	cytosol	74.8	12.06
KRH55275	Soybean	cytosol	75.59	11.94
CDY50512	Canola	nucleus	63.78	10.98
AT1G53090.1	Thale cress	nucleus	64.57	10.33
Bra021100.1-P	Field mustard	nucleus	62.2	10.13
Solyc07g063120.2.1	Tomato	cytosol	66.14	10.12
CDX98548	Canola	nucleus, plastid	62.99	10.08
CDX97654	Canola	nucleus, plastid	62.99	10.06
GSMUA_Achr3P31750_001	Banana	nucleus	60.63	10.03
CDY20122	Canola	nucleus	62.2	10.03
CDY21834	Canola	nucleus, plastid	62.2	9.99
Bra027259.1-P	Field mustard	nucleus, plastid	62.2	9.95
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	58.27	9.69
OQU87453	Sorghum	cytosol	58.27	9.64
Solyc12g013840.1.1	Tomato	nucleus	65.35	9.63
TraesCS3B01G318600.1	Wheat	cytosol	58.27	9.62
TraesCS3D01G284500.2	Wheat	cytosol	58.27	9.61
KRH22086	Soybean	plastid	68.5	9.6
AT3G15354.3	Thale cress	nucleus	63.78	9.59
PGSC0003DMT400039600	Potato	cytosol	65.35	9.56
TraesCS3A01G284700.2	Wheat	cytosol	58.27	9.55
KRH27246	Soybean	plastid	67.72	9.48
VIT_19s0014g02660.t01	Wine grape	nucleus	67.72	9.43
Zm00001d043592_P004	Maize	cytosol	58.27	9.36
Zm00001d011746_P002	Maize	nucleus	57.48	9.14
KRH73341	Soybean	nucleus	37.8	7.17
KRH60015	Soybean	plasma membrane	45.67	6.91
KRH14801	Soybean	nucleus	36.22	6.81
GSMUA_Achr1P13700_001	Banana	nucleus	37.8	6.23
KRH47949	Soybean	nucleus	49.61	6.09
KRH06512	Soybean	nucleus	48.03	5.96
KRH41290	Soybean	nucleus	48.03	5.9
KRH77627	Soybean	nucleus	48.03	5.4
KRH27856	Soybean	nucleus	47.24	5.34
Bra038098.1-P	Field mustard	nucleus	5.51	2.15
KRH25904	Soybean	mitochondrion	1.57	1.8
CDY25880	Canola	nucleus	6.3	1.74
Os01t0725800-01	Rice	nucleus	7.09	1.43

Protein Annotations

EMBL:ACUP02003944	EnsemblPlants:KRH55271	EnsemblPlantsGene:GLYMA_06G241900	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR44218	PANTHER:PTHR44218:SF1
ProteinID:KRH55271	ProteinID:KRH55271.1	SUPFAM:SSF50978	UniParc:UPI0006ED7CE4	UniProt:A0A0R0JLF5	MapMan:35.1

Description

hypothetical protein

Coordinates

chr6:-:40036608..40038344

Molecular Weight (calculated)

14115.7 Da

IEP (calculated)

4.987

GRAVY (calculated)

-0.025

Length

127 amino acids

Sequence
(BLAST)

001: INYTKMSNNL SYTRVFCLNS QAMWEIFILN TPLVPKTISR MSSLQNFVGL SVSDGYIATG SETNEVFIYH KAFPMPALSF KFYSSDPLSG NEEDDSAQFI
101: TSVCWRGQSS TLVAANSTGN VKILEMT

Best Arabidopsis Sequence Match ( AT1G53090.4 )
(BLAST)

001: MSSLRHRVLP PQILLNWPKE ASFCLWLLHP EPSCRPSMSE LLQSEFINEP RENLEEREAA MELRDRIEEQ ELLLEFLFLI QQRKQEAADK LQDTISLLSS
101: DIDQVVKRQL VLQQKGRDVR SFLASRKRIR QGAETTAAEE ENDDNSIDEE SKLDDTLEST LLESSRLMRN LKKLESVYFA TRYRQIKAAT AAEKPLARYY
201: SALSCNGRSS EKSSMSQPSK DPINDSRQGG WIDPFLEGLC KYLSFSKLRV KADLKQGDLL NSSNLVCAIG FDRDGEFFAT AGVNKKIKIF ECESIIKDGR
301: DIHYPVVELA SRSKLSGICW NSYIKSQVAS SNFEGVVQVW DVARNQLVTE MKEHEKRVWS IDYSSADPTL LASGSDDGSV KLWSINQGVS IGTIKTKANI
401: CCVQFPSETG RSLAFGSADH KVYYYDLRNP KLPLCTMIGH HKTVSYVRFV DSSTLVSSST DNTLKLWDLS MSISGINETP LHSFMGHTNV KNFVGLSVSD
501: GYIATGSETN EVFVYHKAFP MPVLSYKFKT IDPVSELEVD DASQFISSVC WRGQSSTLVA ANSTGNIKIL EMV

Arabidopsis Description

SPA4SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.