CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20122	Canola	nucleus	95.83	96.19
CDX98548	Canola	nucleus, plastid	87.48	87.15
CDX97654	Canola	nucleus, plastid	87.48	87.04
AT3G15354.3	Thale cress	nucleus	90.01	84.26
CDY50512	Canola	nucleus	69.41	74.39
CDY25880	Canola	nucleus	39.7	68.11
GSMUA_Achr1P13690_001	Banana	cytosol, mitochondrion, nucleus, plastid	6.32	64.94
KRH55271	Soybean	cytosol	9.99	62.2
Solyc07g063120.2.1	Tomato	cytosol	62.58	59.64
KRH26155	Soybean	cytosol	58.03	58.25
VIT_19s0014g02660.t01	Wine grape	nucleus	66.75	57.89
KRH55275	Soybean	cytosol	58.79	57.84
KRH27246	Soybean	plastid	65.61	57.22
KRH22086	Soybean	plastid	64.73	56.51
Solyc12g013840.1.1	Tomato	nucleus	61.57	56.5
PGSC0003DMT400039600	Potato	cytosol	61.31	55.88
GSMUA_Achr3P31750_001	Banana	nucleus	53.73	55.34
TraesCS3D01G284500.2	Wheat	cytosol	53.35	54.81
TraesCS3B01G318600.1	Wheat	cytosol	53.22	54.75
TraesCS3A01G284700.2	Wheat	cytosol	53.22	54.32
OQU87453	Sorghum	cytosol	52.47	54.04
HORVU3Hr1G068840.2	Barley	cytosol, mitochondrion	51.83	53.66
Zm00001d043592_P004	Maize	cytosol	53.22	53.22
Zm00001d011746_P002	Maize	nucleus	52.97	52.44
GSMUA_Achr1P13700_001	Banana	nucleus	50.32	51.69
Os01t0725800-01	Rice	nucleus	38.05	47.93
CDY19171	Canola	cytosol	14.54	45.63
CDX79494	Canola	cytosol	5.18	39.81
CDY32590	Canola	cytosol	15.04	33.62
CDY38909	Canola	cytosol	14.92	33.52
CDY16865	Canola	nucleus	15.04	32.08
CDX83371	Canola	nucleus	36.03	31.91
CDY52540	Canola	nucleus	26.8	31.31
CDY12145	Canola	nucleus	26.68	31.21
CDX87159	Canola	cytosol	14.54	31.08
CDX95691	Canola	nucleus	35.78	30.96
CDX86817	Canola	nucleus	36.03	29.41
CDY40851	Canola	nucleus	36.54	29.4
CDY42035	Canola	nucleus	35.9	28.89
CDX80009	Canola	nucleus	35.78	28.59

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.16	MapMan:19.2.2.8.3.4.2	Gene3D:2.130.10.10	MapMan:26.1.1.3.3.2	GO:A0A078G8W7
UniProt:A0A078G8W7	EnsemblPlants:CDY21834	ProteinID:CDY21834	ProteinID:CDY21834.1	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00018127001	InterPro:IPR000719	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:Kinase-like_dom_sf	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50011	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44218	PANTHER:PTHR44218:SF1	InterPro:Prot_kinase_dom
SMART:SM00220	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF56112	UniParc:UPI0004EEF4F6	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaC01g36140DBnaC01g36140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8W7]

Coordinates

chrLK032125:-:74544..78350

Molecular Weight (calculated)

88259.5 Da

IEP (calculated)

6.670

GRAVY (calculated)

-0.344

Length

791 amino acids

Sequence
(BLAST)

001: MEGSSNSNSR GFKTSGVSDR NTEFPPFDEC VRSVFGSSTH KPSSEENSLG VDPFVRSLEW GDVSLRQWLD KPERSVDVLE CLHIFRQIVE IVNAAHSQGI
101: VVHNVKPSCF VMSSFNHVSF IESASCSDSG SEDGPISQKE EKGSYNKILE RQIEKLEEEK KQRCLPMKHV LAMETSWYTS PEEEFGSPST CASDVYRLGV
201: LLFELFCPVT SREEKSRTMS SLRHRVLPPQ ILLKCHKEAS FCLWLLHPEP TCRPSMSDLL QSEFITEPRD NLVEHEAAIE LRDRIEEQES LLDLLLLIQQ
301: RKQDSAYRLR DTVSLLSSDI EQVVKRQLIL KKKGSSYSDL SKDDHQSPSG PSTLLASRKR FRQVETDVEV DEESQGSTLL ESSRLMRNFK KLETVYFLTR
401: RRQMKAAALG KSLTRHSPLS SENGRGGSMI SSVSNPVSNN DPPRQGGWID PFLEGLCKYL SFSKLRVKAD LKQGDLLHSY NLVCALAFDR DGELFATAGA
501: NKKIKIFECN SIVNSNRDIH YPVVELASRS TLSSVCWNSY IKSQIASSNF EGVVQIWDVA RSQLVTEMKE HKKRVWSIDI SSADPTLLAS GSDDGTVKLW
601: ILRIGVSTGT IKTKANICCV QFPSDSGRCL AFGSADHKVY YYDLRNPKIP LSTMVGHSKT VSNVKFVDSS TLVSSSTDNT LKLWDLSMSA SGVNETPLHS
701: FAGHTNLKNF VGLSVSDGYI ATGSETNEVF VYHKAFPMPV MSYMFSNTDS MSGLEIDDAS QFISSICWRG QSSTLVAANS NGNIKILEMV A

Best Arabidopsis Sequence Match ( AT3G15354.3 )
(BLAST)

001: MEGSSNSNSR GFNTSGVSDR NTEFLPVERL TTRSKPSSHV DEYVRSLFGS TSTHKSGEDD SLGIDPFVRS LEWGDVSLRQ WLDKPERSVD VFECLHVFRQ
101: IVEIVNAAHS QGIVVHNVRP SCFVMSSFNH VSFIESASCS DSGSDSLEDG PISQKEIGSS RREEAVSKAI AIEEKGVYNK LLERKIEKLE EEKTQPFPMK
201: HILAMETSWY TSPEEDFGSS STCASDVYRL GVLLFELFCP VPSREEKSRT MSSLRHRVLP PQILLKCPKE ASFCLWLLHP EPTCRPSMSD LLQSEFITEP
301: RDNLEEREAA IELRDRIEEQ ESLLEFLLLI QQRKQESAYR LQDTVSLLSS DIEQVVKRQL ILKKRGSSLS DFSKDDHQYT SGQPLMSFQA NEEPSAFLAS
401: RKRVRQGILA LENGVEVDEE SQGSTLLESS RLMRNFKKLE SVYFLTRRRQ MKAAASGKSL TRHSPLSSEN GRGSMIVSEK SSVSNPVAPK AFFNNDSRQG
501: GWIDPFLEGL CRYLSFSQLR VKADLKQGDL LNSSNLVCAL AFDREGELFA TAGVNKKIKI FECNSIVNDN RDIHYPVVEL AGRSKLSSLC WNSYIKSQIA
601: SSNFDGVVQI WDVARSQLVT EMKEHKKRVW SIDISSADPT LLASGSDDGT VKLWSINQGV SIGTIKTKAN VCCVQFPSDS GRSLAFGSAD HKVYYYDLRN
701: PKIPLCTMIG HSKTVSYVKF VDSSTLVSSS TDNTLKLWDL SMSASGINES PLHSFTGHTN LKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVMSYMFN
801: NTDSMSGLEV DDASQFISSI CWRGQSSTLV AANSNGNIKI LEMMT

Arabidopsis Description

SPA3Protein SPA1-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.