CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38909	Canola	cytosol	95.48	96.02
Bra029131.1-P	Field mustard	cytosol	92.94	95.64
AT5G52250.1	Thale cress	cytosol, plastid	84.75	77.92
CDY16865	Canola	nucleus	60.45	57.68
CDX87159	Canola	cytosol	60.17	57.57
Solyc11g005190.1.1	Tomato	cytosol	55.08	54.17
PGSC0003DMT400015453	Potato	cytosol	55.65	53.24
GSMUA_Achr9P23670_001	Banana	cytosol	38.42	52.31
GSMUA_Achr4P11950_001	Banana	mitochondrion	38.7	45.97
TraesCS6D01G045000.1	Wheat	plastid	47.18	40.93
TraesCS6A01G039200.1	Wheat	plastid	46.89	40.69
TraesCS6B01G054100.1	Wheat	plastid	46.61	40.24
Zm00001d014990_P001	Maize	cytosol	46.89	39.9
OQU84205	Sorghum	plastid	48.87	34.81
CDY19171	Canola	cytosol	22.32	31.35
VIT_16s0050g00020.t01	Wine grape	cytosol	58.47	26.88
CDX79494	Canola	cytosol	6.78	23.3
CDY50512	Canola	nucleus	34.18	16.4
CDY52540	Canola	nucleus	30.79	16.1
CDY12145	Canola	nucleus	30.51	15.98
CDY20122	Canola	nucleus	33.62	15.1
CDY21834	Canola	nucleus, plastid	33.62	15.04
CDX97654	Canola	nucleus, plastid	32.49	14.47
CDX98548	Canola	nucleus, plastid	32.2	14.36
CDX83371	Canola	nucleus	31.36	12.43
CDX95691	Canola	nucleus	30.79	11.93
CDY40851	Canola	nucleus	31.92	11.5
CDX86817	Canola	nucleus	31.36	11.46
CDY42035	Canola	nucleus	31.36	11.29
CDX80009	Canola	nucleus	31.36	11.21
CDY25880	Canola	nucleus	5.08	3.9
Os12t0558133-00	Rice	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

MapMan:18.4.16	Gene3D:2.130.10.10	MapMan:26.1.3.3	UniProt:A0A078H1R8	EnsemblPlants:CDY32590	ProteinID:CDY32590
ProteinID:CDY32590.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00052606001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR45389	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EEC56D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaC03g15580DBnaC03g15580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1R8]

Coordinates

chrLK032297:-:50741..51805

Molecular Weight (calculated)

38689.0 Da

IEP (calculated)

4.695

GRAVY (calculated)

-0.315

Length

354 amino acids

Sequence
(BLAST)

001: MISSSSSPTT MDRDNNIPRF DWDLSFSAVV SSPSTGTDAI GAIEFDPSGE ILATGGIARK IRIYRLNSLL GTSRDDDDDD HVESCICTPA KLSSLKWRPD
101: LSGRVIGSGD YDGVVTEYDV EKGVPVFERD EHGGRKIWSV DYTLRNGSAL GASGSDDGTV QMWDPRNGGL EETVRPGGGA AAICSVEFDP LGGNLLAVGC
201: ADRNAYVYDI RRLVDPIFVL DGHTKTVTYA RFMDQHTIVT GSTDGSLKLW DIANGQLVVR TFRGHVNSRN FVGLSVWRHG GLVVSGSEND EVFVYDKRWG
301: EPVWVRGLGG QTDRFRSDRR FVSSVCWRQT DEDWCTLVAG GSDGVLEIFS GIRN

Best Arabidopsis Sequence Match ( AT5G52250.1 )
(BLAST)

001: MEALFCSEIP NNNIRSSIND LSSSSSYTWP MIMTSSSSSS SSPTIMNIEN IPRCDWDLSL SAVVSSASTG SDAIGAIEFD PTGEIIATGG IARKIRSYRL
101: SSLLESRDDH VTASESYICT PAKLSSLKWR PDFSGRVIGS GDYDGVVTEY DVEKQVPVSE RDEHGGRRIW SVDYTLYNGS LIGASGSDDG TVQMWDPRNG
201: GTLEETVRPG GGAAICSVEF DPFGGSSIAV GCADRNAYVY DIRRLVDPLI VLDGHTKTVT YARFMDSHTI VTGSTDGSLK QWDIDNGRRV VRTYRGHVNS
301: RNFVGLSVWR HGGLVVSGSE NNQVFVYDKR WEEPVWVCGL GHTNRFGSDR RFVSSVCLRQ VDEDWCTLVA GGSDGALEIF SGKQS

Arabidopsis Description

RUP1WD repeat-containing protein RUP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.