Factsheet for Bra029131.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38909	Canola	cytosol	97.38	95.17
CDY32590	Canola	cytosol	95.64	92.94
AT5G52250.1	Thale cress	cytosol, plastid	83.72	74.81
Bra026485.1-P	Field mustard	cytosol	35.17	61.11
Solyc11g005190.1.1	Tomato	cytosol	58.14	55.56
PGSC0003DMT400015453	Potato	cytosol	59.01	54.86
GSMUA_Achr9P23670_001	Banana	cytosol	39.24	51.92
GSMUA_Achr4P11950_001	Banana	mitochondrion	40.41	46.64
TraesCS6D01G045000.1	Wheat	plastid	48.84	41.18
TraesCS6A01G039200.1	Wheat	plastid	48.55	40.93
TraesCS6B01G054100.1	Wheat	plastid	48.26	40.49
Zm00001d014990_P001	Maize	cytosol	48.55	40.14
OQU84205	Sorghum	plastid	50.0	34.61
Bra021818.1-P	Field mustard	cytosol	11.92	34.45
VIT_16s0050g00020.t01	Wine grape	cytosol	61.05	27.27
Bra005541.1-P	Field mustard	nucleus	30.52	15.7
Bra021100.1-P	Field mustard	nucleus	33.72	14.87
Bra027259.1-P	Field mustard	nucleus, plastid	33.14	14.36
Bra000420.1-P	Field mustard	nucleus	32.56	11.75
Bra035252.1-P	Field mustard	nucleus	32.27	11.33
Bra004545.1-P	Field mustard	nucleus	32.56	11.09
Bra038098.1-P	Field mustard	nucleus	4.94	5.23
Os12t0558133-00	Rice	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

MapMan:18.4.16	Gene3D:2.130.10.10	MapMan:26.1.3.3	EnsemblPlantsGene:Bra029131	EnsemblPlants:Bra029131.1	EnsemblPlants:Bra029131.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0009628	GO:GO:0010114
GO:GO:0010218	GO:GO:0010224	GO:GO:0043496	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4EK14	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR45389
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002540078	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT5G52250 (E=5e-162) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA03:-:6498064..6499098

Molecular Weight (calculated)

37793.0 Da

IEP (calculated)

4.823

GRAVY (calculated)

-0.345

Length

344 amino acids

Sequence
(BLAST)

001: MDRDNNIPRF DWDLSFSTVV SSPSTGTDAI GAIEFDPSGE ILATGGIARK IRIYRLNSLL GTSRDDDDDD HVERCICTPA KLSSLKWRPD LTGRVIGSGD
101: YDGVVSEYDV EKGVPVFERD EHGGRKIWSV DYTLRSGSVL GASGSDDGTV QMWDPRNGGL DETVRPGGGT AAICSVEFDP FGGNFLAVGC ADRNAYVYDV
201: RRLVDPIFVL DGHTKTVTYA RFMDQHTIVT GSTDGSLKLW DIANGQRVVR TFRGHVNSRN FVGLSVWRHG GLVVSGSENN EVFVYDKRWG EPVWVRGLGG
301: QTDRFGSDRR FVSSVCWRQA DEDWCTLVAG GSDGVLEIFS GIRN

Best Arabidopsis Sequence Match ( AT5G52250.1 )
(BLAST)

001: MEALFCSEIP NNNIRSSIND LSSSSSYTWP MIMTSSSSSS SSPTIMNIEN IPRCDWDLSL SAVVSSASTG SDAIGAIEFD PTGEIIATGG IARKIRSYRL
101: SSLLESRDDH VTASESYICT PAKLSSLKWR PDFSGRVIGS GDYDGVVTEY DVEKQVPVSE RDEHGGRRIW SVDYTLYNGS LIGASGSDDG TVQMWDPRNG
201: GTLEETVRPG GGAAICSVEF DPFGGSSIAV GCADRNAYVY DIRRLVDPLI VLDGHTKTVT YARFMDSHTI VTGSTDGSLK QWDIDNGRRV VRTYRGHVNS
301: RNFVGLSVWR HGGLVVSGSE NNQVFVYDKR WEEPVWVCGL GHTNRFGSDR RFVSSVCLRQ VDEDWCTLVA GGSDGALEIF SGKQS

Arabidopsis Description

RUP1WD repeat-containing protein RUP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.