Factsheet for Bra005541.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001650.1-P
Bra002827.1-P
Bra003748.1-P
Bra005541.1-P
Bra006246.1-P
Bra006326.1-P
Bra008668.1-P
Bra008669.1-P
Bra013900.1-P
Bra015313.1-P
Bra015469.1-P
Bra017569.1-P
Bra018249.1-P
Bra019154.1-P
Bra021734.1-P
Bra022023.1-P
Bra022192.1-P
Bra023453.1-P
Bra023541.1-P
Bra024242.1-P
Bra025031.1-P
Bra027422.1-P
Bra029198.1-P
Bra030136.1-P
Bra030568.1-P
Bra030635.1-P
Bra032061.1-P
Bra032441.1-P
Bra032610.1-P
Bra033315.1-P
Bra037755.1-P
Bra037800.1-P
Bra037880.1-P
Bra038098.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32950.1	Bra032610.1-P	AT1G02340.1	15741320
AT2G32950.1	Bra033315.1-P	AT1G02340.1	15741320
AT2G32950.1	Bra032610.1-P	AT1G02340.1	17699755
AT2G32950.1	Bra033315.1-P	AT1G02340.1	17699755
AT2G32950.1	Bra015313.1-P	AT1G04400.1	11509693
AT2G32950.1	Bra030568.1-P	AT1G04400.1	11509693
AT2G32950.1	Bra015469.1-P	AT1G06040.1	11226162
AT2G32950.1	Bra030635.1-P	AT1G06040.1	11226162
AT2G32950.1	Bra032441.1-P	AT1G06040.1	11226162
AT2G32950.1	Bra038098.1-P	AT1G53090.1	12887588
AT2G32950.1	Bra038098.1-P	AT1G53090.1	18812498
AT2G32950.1	Bra038098.1-P	AT1G53090.1	21798944
AT2G32950.1	Bra003748.1-P	AT1G75540.1	17965270
AT2G32950.1	Bra001650.1-P	AT2G18790.1	11752373
AT2G32950.1	Bra022192.1-P	AT2G18790.1	11752373
AT2G32950.1	Bra032061.1-P	AT2G24790.1	16339850
AT2G32950.1	Bra018249.1-P	AT2G31380.1	11226162
AT2G32950.1	Bra021734.1-P	AT2G31380.1	11226162
AT2G32950.1	Bra005541.1-P	AT2G32950.1	18812498
AT2G32950.1	Bra005541.1-P	AT2G32950.1	9755158
AT2G32950.1	Bra027422.1-P	AT3G13550.1	11877375
AT2G32950.1	Bra027422.1-P	AT3G13550.1	16844902
AT2G32950.1	Bra037880.1-P	AT4G08920.1	11509693
AT2G32950.1	Bra037880.1-P	AT4G08920.1	11752373
AT2G32950.1	Bra013900.1-P	AT4G25560.1	12827204
AT2G32950.1	Bra019154.1-P	AT4G25560.1	12827204
AT2G32950.1	Bra006246.1-P	AT5G14250.1	14597662
AT2G32950.1	Bra006326.1-P	AT5G14250.1	14597662
AT2G32950.1	Bra023453.1-P	AT5G14250.1	14597662
AT2G32950.1	Bra008669.1-P	AT5G15840.1	18296627
AT2G32950.1	Bra008669.1-P	AT5G15840.1	18388858
AT2G32950.1	Bra008668.1-P	AT5G15850.1	18812498
AT2G32950.1	Bra023541.1-P	AT5G15850.1	18812498
AT2G32950.1	Bra017569.1-P	AT5G46210.1	16844902
AT2G32950.1	Bra022023.1-P	AT5G46210.1	16844902
AT2G32950.1	Bra025031.1-P	AT5G46210.1	16844902
AT2G32950.1	Bra002827.1-P	AT5G56280.1	14597662
AT2G32950.1	Bra024242.1-P	AT5G63860.1	19165148
AT2G32950.1	Bra029198.1-P	AT5G63860.1	19165148
AT2G32950.1	Bra037755.1-P	AT5G63860.1	19165148
AT2G32950.1	Bra030136.1-P	AT5G64920.1	10488108
AT2G32950.1	Bra037800.1-P	AT5G64920.1	10488108
AT2G32950.1	Bra030136.1-P	AT5G64920.1	12028569
AT2G32950.1	Bra037800.1-P	AT5G64920.1	12028569
AT2G32950.1	Bra030136.1-P	AT5G64920.1	12827204
AT2G32950.1	Bra037800.1-P	AT5G64920.1	12827204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52540	Canola	nucleus	99.4	98.23
CDY12145	Canola	nucleus	98.36	97.34
AT2G32950.1	Thale cress	nucleus	94.32	93.48
Bra021818.1-P	Field mustard	cytosol	16.44	92.44
KRH14801	Soybean	nucleus	77.13	76.44
KRH73341	Soybean	nucleus	76.08	76.08
Solyc12g005950.1.1	Tomato	nucleus	76.53	75.63
PGSC0003DMT400036075	Potato	nucleus	73.24	75.04
GSMUA_Achr3P20130_001	Banana	nucleus	70.4	69.67
GSMUA_AchrUn_...	Banana	nucleus	65.17	68.23
Zm00001d052138_P004	Maize	nucleus	69.96	68.22
Os02t0771100-01	Rice	nucleus	69.66	68.03
Zm00001d018207_P001	Maize	nucleus	69.96	67.53
KXG31183	Sorghum	nucleus, plastid	69.96	67.34
TraesCS6B01G356400.1	Wheat	nucleus	68.76	66.38
TraesCS6A01G326100.1	Wheat	nucleus	69.21	66.14
TraesCS6D01G305800.1	Wheat	nucleus	68.91	65.95
Bra026485.1-P	Field mustard	cytosol	9.42	31.82
Bra029131.1-P	Field mustard	cytosol	15.7	30.52
Bra021100.1-P	Field mustard	nucleus	30.64	26.28
Bra027259.1-P	Field mustard	nucleus, plastid	30.79	25.94
Bra000420.1-P	Field mustard	nucleus	30.04	21.09
Bra004545.1-P	Field mustard	nucleus	30.94	20.5
Bra035252.1-P	Field mustard	nucleus	29.45	20.1
Bra038098.1-P	Field mustard	nucleus	9.57	19.69

Protein Annotations

MapMan:18.4.16	MapMan:19.2.2.8.3.4.1	Gene3D:2.130.10.10	MapMan:26.1.1.3.3.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra005541
EnsemblPlants:Bra005541.1	EnsemblPlants:Bra005541.1-P	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009628
GO:GO:0009640	GO:GO:0009641	GO:GO:0009649	GO:GO:0009791	GO:GO:0009987	GO:GO:0010119
GO:GO:0016567	GO:GO:0016604	GO:GO:0016740	GO:GO:0019538	GO:GO:0042802	GO:GO:0046283
GO:GO:0048573	GO:GO:0061630	InterPro:IPR001680	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR015943
InterPro:IPR017986	UniProt:M4CMV3	PFAM:PF00400	PFAM:PF13923	ScanProsite:PS00518	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50089	PFscan:PS50294	PANTHER:PTHR44080	PANTHER:PTHR44080:SF2	SMART:SM00184
SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF57850	UniParc:UPI00025474F4	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

AT2G32950 (E=0.0) COP1, ATCOP1, DET340, FUS1, EMB168 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase

Coordinates

chrA05:-:6115933..6119407

Molecular Weight (calculated)

75404.8 Da

IEP (calculated)

6.761

GRAVY (calculated)

-0.542

Length

669 amino acids

Sequence
(BLAST)

001: MEEIRKDPLV PAVKPDPRAS SIGEGPNHRH ENDEGGSGGL EIGAPDLDKD LLCPICMQVI KDAFLTACGH SFCYMCIITH LRNKSDCPCC SQHLTNNQLY
101: PNFLLDKLLK KTSARHVSKT ASPLDQFRDA LQRGCDVSIK EVDNLLTLLA EKKRKMEQEE AERNMQILLD FLHCLRKQKV DELNEVQTDL QYIKEDINAV
201: ERHRIDLYRA RDRYSVKLRM LGDDPSTRNA WPLEKSHTGF NSNSLSIRGG NPSGNFQNKK VVEGKAQGSS HGISKKDAQS GSDSQSLNQS SVSMARKKRI
301: HAQFNDLQEC YLQKRRQLVD QPHTNQESDN SVVRREGYSH GLADFQSVLT TFTRYSRLRV IAEIRHGDIF HSANIVSSIE FDRDDELFAT AGVSRCIKVF
401: DFSSVVNEPA DIQCPIVEMS TRSKLSCLSW NKHEKNHIAS SDYEGIVTVW DVTTRQSLME YEEHEKRAWS VDFSRTEPSM LVSGSDDCKE ASVLNIDMKA
501: NICCVKYNPG SSNFIAVGSA DHHIHYYDLR NISQPLHVFS GHKKAVSYVK FLSNNELASA STDSTLRLWD VKDNLPVRTF RGHTNEKNFV GLTVNSEYLA
601: CGSETNEVYV YHKEITKPVT SHRFGSLDME EAEEEAGSYF ISAVCWKSDS PTMLTANSQG TIKVLVLAA

Best Arabidopsis Sequence Match ( AT2G32950.1 )
(BLAST)

001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA

Arabidopsis Description

COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.