Factsheet for Bra024242.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005541.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63860.1	Bra005541.1-P	AT2G32950.1	19165148

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43762	Canola	cytosol	98.78	94.86
Bra029198.1-P	Field mustard	cytosol	91.24	91.02
Bra037755.1-P	Field mustard	cytosol	91.73	90.62
AT5G63860.1	Thale cress	cytosol	92.94	86.82
VIT_07s0031g02560.t01	Wine grape	cytosol	80.54	74.38
GSMUA_Achr6P17690_001	Banana	cytosol	75.91	71.07
GSMUA_Achr3P19000_001	Banana	nucleus	76.16	69.71
Solyc05g018620.2.1	Tomato	cytosol	51.82	69.38
HORVU2Hr1G076180.1	Barley	cytosol, endoplasmic reticulum	73.24	68.25
EES10837	Sorghum	cytosol	73.24	67.95
Os04t0435700-01	Rice	plasma membrane	74.7	67.77
Zm00001d003632_P003	Maize	extracellular	72.99	67.72
TraesCS2A01G306400.3	Wheat	cytosol	72.99	67.72
TraesCS2D01G304900.2	Wheat	cytosol	72.99	67.72
TraesCS2B01G323100.1	Wheat	unclear	72.75	67.65
KRH59606	Soybean	cytosol	71.53	67.28
Os02t0554100-01	Rice	cytosol, plasma membrane	72.51	65.78
KRH53944	Soybean	plastid	73.97	64.14
KRH63996	Soybean	nucleus	74.21	63.28
KRH40960	Soybean	cytosol	51.58	62.72
TraesCS6D01G142500.1	Wheat	golgi	66.67	62.27
TraesCS6B01G180900.1	Wheat	cytosol	61.31	62.22
HORVU6Hr1G030600.2	Barley	plasma membrane	66.67	61.99
TraesCS6A01G153100.1	Wheat	golgi	66.67	58.3
Bra016304.1-P	Field mustard	cytosol	23.6	26.29
Bra021435.1-P	Field mustard	cytosol	23.84	25.0
Bra028647.1-P	Field mustard	mitochondrion	26.03	24.49
Bra024664.1-P	Field mustard	cytosol	21.17	24.23
Bra008654.1-P	Field mustard	cytosol	23.36	24.18
Bra013002.1-P	Field mustard	mitochondrion	24.09	22.35
Bra027244.1-P	Field mustard	cytosol	25.79	21.63
Bra039169.1-P	Field mustard	cytosol	23.36	20.38
Bra017335.1-P	Field mustard	cytosol	25.79	19.96
Bra004253.1-P	Field mustard	plastid	24.82	19.69
Bra025182.1-P	Field mustard	cytosol	24.57	19.09
Bra004074.1-P	Field mustard	cytosol, plastid	23.84	18.88
Bra036349.1-P	Field mustard	cytosol, plastid	23.84	17.85
Bra016214.1-P	Field mustard	cytosol	36.98	14.48
Bra019511.1-P	Field mustard	cytosol	33.09	14.21
Bra008895.1-P	Field mustard	nucleus	35.52	13.72
Bra038181.1-P	Field mustard	cytosol	32.6	13.37
Bra006504.1-P	Field mustard	cytosol	35.28	13.15
Bra023374.1-P	Field mustard	nucleus	35.52	13.13
Bra023740.1-P	Field mustard	cytosol	33.82	13.04
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	26.03	13.02
Bra002235.1-P	Field mustard	nucleus	35.04	12.93
Bra003698.1-P	Field mustard	mitochondrion	33.82	12.91
Bra015708.1-P	Field mustard	cytosol	33.33	12.76
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	31.87	11.31
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	33.33	10.79

Protein Annotations

Gene3D:2.130.10.30	MapMan:26.1.3.1	EnsemblPlantsGene:Bra024242	EnsemblPlants:Bra024242.1	EnsemblPlants:Bra024242.1-P	GO:GO:0003674
GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009628	GO:GO:0009881	GO:GO:0009987	GO:GO:0010224	GO:GO:0038023	GO:GO:0042803
InterPro:IPR000408	InterPro:IPR009091	UniProt:M4E638	PFAM:PF00415	PFAM:PF13540	PRINTS:PR00633
ScanProsite:PS00626	PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF317	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens
SUPFAM:SSF50985	UniParc:UPI000253F32B	InterPro:UVR8	:	:	:

Description

AT5G63860 (E=1e-173) UVR8 | UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor

Coordinates

chrA06:-:14492462..14495648

Molecular Weight (calculated)

44172.4 Da

IEP (calculated)

5.529

GRAVY (calculated)

-0.410

Length

411 amino acids

Sequence
(BLAST)

001: MAEEEMVASD VTAPPRKVLI ISAGASHSVA LLSGDIVCSW GRGEDGQLGH GDAEDRPSPT QLSALDDHQI VSVTCGADHT VAYSESRKEV YSWGWGDFGR
101: LGHGNSSDLF TPLPIKALHG IRIKQIACGD SHCLAVTMDG EVQSWGRNQN GQLGLGDTED SLVPKKIQAF EGIRIKMVAA GAEHTAAVTE DGDLYGWGWG
201: RYGNLGLGDR NDRLVPERVT SASGEKMSMV ACGWRHTIAV SYSGALYTYG WSKYGQLGHG DLEDHLVPHK LEALSNSVIS QISGGWRHTM ALTSDGKLYG
301: WGWNKKVVQV SCGWRHTLAV TERNNVFAWG RGTNGQLGIG ECLDRNYPQI IEALSVDGES GQHIESSNFD PSSGKSWVSP AERYAVVPDE KTGQTDGSSK
401: GNGSDMSVPT N

Best Arabidopsis Sequence Match ( AT5G63860.1 )
(BLAST)

001: MAEDMAADEV TAPPRKVLII SAGASHSVAL LSGDIVCSWG RGEDGQLGHG DAEDRPSPTQ LSALDGHQIV SVTCGADHTV AYSQSGMEVY SWGWGDFGRL
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI

Arabidopsis Description

UVR8Ultraviolet-B receptor UVR8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.