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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH14801
KRH73341

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH53944 Soybean plastid 88.59 90.08
KRH59606 Soybean cytosol 68.26 75.29
VIT_07s0031g02560.t01 Wine grape cytosol 69.5 75.28
AT5G63860.1 Thale cress cytosol 68.67 75.23
Bra029198.1-P Field mustard cytosol 64.11 75.0
Bra037755.1-P Field mustard cytosol 64.73 75.0
CDY31347 Canola cytosol 67.84 75.0
CDX81201 Canola cytosol 68.26 74.77
CDY43762 Canola cytosol 65.98 74.3
Bra024242.1-P Field mustard cytosol 63.28 74.21
CDY60046 Canola cytosol 68.88 74.11
CDY39843 Canola cytosol 60.79 72.52
CDX84451 Canola cytosol 66.6 71.97
Solyc05g018620.2.1 Tomato cytosol 45.64 71.66
KRH40960 Soybean cytosol 49.79 71.01
GSMUA_Achr6P17690_001 Banana cytosol 64.52 70.84
GSMUA_Achr3P19000_001 Banana nucleus 64.94 69.71
EES10837 Sorghum cytosol 63.9 69.53
Os02t0554100-01 Rice cytosol, plasma membrane 64.94 69.09
Zm00001d003632_P003 Maize extracellular 63.49 69.07
HORVU2Hr1G076180.1 Barley cytosol, endoplasmic reticulum 62.66 68.48
Os04t0435700-01 Rice plasma membrane 64.32 68.43
TraesCS2B01G323100.1 Wheat unclear 62.66 68.33
TraesCS2D01G304900.2 Wheat cytosol 62.66 68.17
TraesCS2A01G306400.3 Wheat cytosol 62.45 67.95
TraesCS6B01G180900.1 Wheat cytosol 56.43 67.16
TraesCS6D01G142500.1 Wheat golgi 61.0 66.82
HORVU6Hr1G030600.2 Barley plasma membrane 61.0 66.52
TraesCS6A01G153100.1 Wheat golgi 61.83 63.4
KRH63955 Soybean mitochondrion 23.03 26.62
KRH53977 Soybean cytosol, mitochondrion, nucleus 17.22 25.94
KRG93861 Soybean nucleus 20.95 25.57
KRH49501 Soybean cytosol 8.09 22.54
KRH46563 Soybean mitochondrion 20.54 22.3
KRH45102 Soybean cytosol, nucleus, peroxisome 21.78 22.15
KRH01383 Soybean cytosol 21.78 22.15
KRH22127 Soybean cytosol 21.37 21.24
KRH08750 Soybean cytosol 28.01 21.19
KRH27216 Soybean cytosol 21.37 20.4
KRH30228 Soybean cytosol 17.01 20.15
KRG97505 Soybean cytosol 21.58 19.44
KRH31377 Soybean cytosol 21.16 19.21
KRH69375 Soybean nucleus 23.44 19.12
KRH74759 Soybean nucleus 22.2 19.01
KRH59226 Soybean cytosol 19.5 17.6
KRH45886 Soybean nucleus 29.46 14.92
KRG99112 Soybean cytosol 29.88 14.69
KRH73555 Soybean nucleus 32.16 13.99
KRH40796 Soybean cytosol 21.58 13.87
KRH14571 Soybean nucleus 31.74 13.82
KRG99075 Soybean nucleus 31.54 13.74
KRH45937 Soybean nucleus 31.54 13.71
KRH00393 Soybean cytosol 29.67 13.38
KRG91629 Soybean cytosol 30.29 13.3
KRH70333 Soybean cytosol 30.71 13.21
KRG98005 Soybean cytosol 28.84 12.99
KRH35179 Soybean cytosol 30.08 12.95
KRH69117 Soybean cytosol 28.42 12.71
KRH30884 Soybean cytosol 28.22 12.66
KRH31700 Soybean cytosol 28.01 12.52
KRH65503 Soybean cytosol, mitochondrion, nucleus 26.14 12.05
KRH08736 Soybean endoplasmic reticulum 15.35 10.62
KRH30227 Soybean cytosol 6.43 6.87
Protein Annotations
EntrezGene:100818229Gene3D:2.130.10.30MapMan:26.1.3.1EMBL:ACUP02002734EnsemblPlantsGene:GLYMA_04G209600GO:GO:0003674
GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0009628GO:GO:0009881GO:GO:0009987GO:GO:0010224GO:GO:0038023GO:GO:0042803
UniProt:I1JXY7InterPro:IPR000408InterPro:IPR009091EnsemblPlants:KRH63996ProteinID:KRH63996ProteinID:KRH63996.1
PFAM:PF00415PRINTS:PR00633ScanProsite:PS00626PFscan:PS50012PANTHER:PTHR22870PANTHER:PTHR22870:SF317
InterPro:RCC1/BLIP-IIInterPro:Reg_chr_condensSUPFAM:SSF50985UniParc:UPI000296170DInterPro:UVR8SEG:seg
Description
hypothetical protein
Coordinates
chr4:-:48160270..48168508
Molecular Weight (calculated)
52093.1 Da
IEP (calculated)
5.984
GRAVY (calculated)
-0.325
Length
482 amino acids
Sequence
(BLAST)
001: MKCYFDGQYR IRCEKTTEKS NSFIINDINS LLLLTHSFTP NMMELEATAA TSPPSRVLLI SAGASHTVAL LSGNVVCSWG RGEDGQLGHG DTDDRPLPTQ
101: LSALDAQHID SIACGADHTL AYSESRNELY SWGWGDFGRL GHGNSSDLLI PQPIIALQGL RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGNTEDS
201: LVPQKIQAFK GVPIKMVAAG AEHSVAITEN GELYGWGWGR YGNLGLGDRN DRWNPEKVSS VDCDKMVMVA CGWRHTISVS SSGGIYTYGW SKYGQLGHGN
301: FEDSLVPQKL QALSDKLISQ VSGGWRHSMA LTSTGLLFGW GWNKFGQVGV GDNLDHCSPV QVKFPQDQRV VQISCGWRHT IAVTEKENVF SWGRGTNGQL
401: GHGDTIDRNS PKIIEALSVD GSAGPHIESS NTDLLSGKSG VSLSERYAVV PDETVSGQTA SSSSGDRLEI SVPESDVKRL RV
Best Arabidopsis Sequence Match ( AT5G63860.1 )
(BLAST)
001: MAEDMAADEV TAPPRKVLII SAGASHSVAL LSGDIVCSWG RGEDGQLGHG DAEDRPSPTQ LSALDGHQIV SVTCGADHTV AYSQSGMEVY SWGWGDFGRL
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI
Arabidopsis Description
UVR8Ultraviolet-B receptor UVR8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN03]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.