CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g042980.2.1	Tomato	cytosol	40.54	74.07
GSMUA_Achr8P06920_001	Banana	cytosol	52.48	71.25
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	51.13	69.0
Bra013002.1-P	Field mustard	mitochondrion	66.44	66.59
HORVU5Hr1G089510.1	Barley	cytosol	53.83	66.39
CDY02190	Canola	mitochondrion	66.22	66.37
CDY51633	Canola	mitochondrion	66.22	66.22
AT5G60870.2	Thale cress	mitochondrion	65.32	64.16
Zm00001d021372_P001	Maize	mitochondrion	61.49	63.19
TraesCS5B01G366300.1	Wheat	mitochondrion	62.16	63.01
EER97183	Sorghum	mitochondrion	61.04	62.73
Os09t0560450-01	Rice	mitochondrion	61.71	62.7
TraesCS5D01G373300.1	Wheat	mitochondrion	61.71	62.56
TraesCS5A01G364400.2	Wheat	mitochondrion	61.49	62.33
Solyc07g042970.2.1	Tomato	mitochondrion	30.63	56.43
Os04t0226400-01	Rice	plastid	22.97	47.0
KRH53977	Soybean	cytosol, mitochondrion, nucleus	16.89	23.44
KRG93861	Soybean	nucleus	19.82	22.28
KRH53944	Soybean	plastid	23.42	21.94
KRH59606	Soybean	cytosol	21.4	21.74
KRH63955	Soybean	mitochondrion	20.05	21.34
KRH40960	Soybean	cytosol	15.77	20.71
KRH63996	Soybean	nucleus	22.3	20.54
KRH08750	Soybean	cytosol	26.8	18.68
KRH45102	Soybean	cytosol, nucleus, peroxisome	19.37	18.14
KRH01383	Soybean	cytosol	19.37	18.14
KRH22127	Soybean	cytosol	17.79	16.29
KRH30228	Soybean	cytosol	14.86	16.22
KRH74759	Soybean	nucleus	20.05	15.81
KRH59226	Soybean	cytosol	18.92	15.73
KRH27216	Soybean	cytosol	17.79	15.64
KRH69375	Soybean	nucleus	19.82	14.89
KRG97505	Soybean	cytosol	17.79	14.77
KRH31377	Soybean	cytosol	17.34	14.5
KRH45886	Soybean	nucleus	27.93	13.03
KRG99112	Soybean	cytosol	27.48	12.45
KRH49501	Soybean	cytosol	4.5	11.56
KRH70333	Soybean	cytosol	29.05	11.52
KRH14571	Soybean	nucleus	28.6	11.47
KRH73555	Soybean	nucleus	28.38	11.37
KRG99075	Soybean	nucleus	27.93	11.21
KRG91629	Soybean	cytosol	27.7	11.2
KRH69117	Soybean	cytosol	26.8	11.04
KRH31700	Soybean	cytosol	26.58	10.95
KRH45937	Soybean	nucleus	27.25	10.91
KRH35179	Soybean	cytosol	27.48	10.89
KRG98005	Soybean	cytosol	25.9	10.75
KRH30884	Soybean	cytosol	25.68	10.61
KRH65503	Soybean	cytosol, mitochondrion, nucleus	24.77	10.52
KRH40796	Soybean	cytosol	17.34	10.27
KRH00393	Soybean	cytosol	24.32	10.1
KRH08736	Soybean	endoplasmic reticulum	13.96	8.9
KRH30227	Soybean	cytosol	8.56	8.43

Protein Annotations

EntrezGene:100808855	MapMan:16.12.2.2.2	Gene3D:2.130.10.30	EMBL:ACUP02005350	EnsemblPlantsGene:GLYMA_08G342500	UniProt:I1KYX5
InterPro:IPR000408	InterPro:IPR009091	EnsemblPlants:KRH46563	ProteinID:KRH46563	ProteinID:KRH46563.1	PFAM:PF00415
PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985
UniParc:UPI0002339242	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:45794389..45799516

Molecular Weight (calculated)

46675.8 Da

IEP (calculated)

7.519

GRAVY (calculated)

-0.061

Length

444 amino acids

Sequence
(BLAST)

001: MVMPLLRHRL ATLTHRLRHS SAAAATPKPP ILYTADTTAD ATATLQVLSW GKGASGQLGG GVEETRLYPS PVANLAVPKS SFALSQTPGR RRLLPSPPKR
101: ALEVGLSCGL FHSSLIVDGA LWIWGKGDGG RLGFGHENPL FVPTLNPHLD NLLSVALGGL HSVALTSDGE VFTWGYGGFG ALGHSVYHRE LFPRLVKGSW
201: EGTIKHIATS GTHTAAITES GELYIWGRDE GDGRLGLGPG RGPDHAGGLS IPSKVKELPY PIAAVSCGGF FTMALTVDGQ LWNWGANSNY ELGRGDKIGG
301: WKPRPVPSLE NVKIIQLASG GYHSLALTDD GKVLSWGHGG QGQLGHGSIQ NQKIPAVVEA LAHENIIYIS CGGSSSAAVT DNGKLYMWGN ANDSQLGIPG
401: LPPVQSCPVE VNFLMEDDGL GPHKVLSVAI GASHAMCLAL RESS

Best Arabidopsis Sequence Match ( AT5G60870.1 )
(BLAST)

001: MAALSHRLRS FTRRFSSTRT TQRSGGGANT KVPILYTSPD IDSDPVTLQL FSWGRGASGQ LGGGIEEIRM YPSPVANLLF RSDQSFSLAQ TPGRIDADSS
101: SFRIGISCGL FHSGLTIDGD LWIWGKGDGG RLGFGQENSV FVPNLNPLFE EHSIRCIALG GLHSVALTHQ GDVFTWGYGG FGALGHKVYT RELVPRRVDD
201: SWDCKISAIA TSGTHTAAIT ESGELYMWGR EEGDGRLGLG PGRGPNEGGG LSVPSKVKAL TVPVASVSCG GFFTMALTKE GQLWNWGANS NYELGRGDNL
301: GGWEPMPVPS LEGVRITQIA CGGYHSLALT EEGKVLSWGH GGHGQLGSSS LRNQKVPTEI EALADKKIVF IASGGSSSAA ITDGGELWMW GNAKDFQLGV
401: PGLPEIQTTP VEVNFLTEED ECQPHKVISI SIGASHALCL VSRSP

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:TAIR;Acc:AT5G60870]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.