Factsheet for Bra013002.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02190	Canola	mitochondrion	99.55	99.55
AT5G60870.2	Thale cress	mitochondrion	90.97	89.16
Solyc07g042980.2.1	Tomato	cytosol	39.05	71.19
GSMUA_Achr8P06920_001	Banana	cytosol	49.89	67.58
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	49.66	66.87
KRH46563	Soybean	mitochondrion	66.59	66.44
HORVU5Hr1G089510.1	Barley	cytosol	53.5	65.83
Zm00001d021372_P001	Maize	mitochondrion	62.98	64.58
EER97183	Sorghum	mitochondrion	62.98	64.58
Os09t0560450-01	Rice	mitochondrion	63.66	64.53
TraesCS5D01G373300.1	Wheat	mitochondrion	62.3	63.01
TraesCS5B01G366300.1	Wheat	mitochondrion	62.3	63.01
TraesCS5A01G364400.2	Wheat	mitochondrion	61.63	62.33
Solyc07g042970.2.1	Tomato	mitochondrion	29.8	54.77
Os04t0226400-01	Rice	plastid	21.44	43.78
Bra008654.1-P	Field mustard	cytosol	22.12	24.69
Bra024242.1-P	Field mustard	cytosol	22.35	24.09
Bra029198.1-P	Field mustard	cytosol	21.9	23.54
Bra021435.1-P	Field mustard	cytosol	20.77	23.47
Bra037755.1-P	Field mustard	cytosol	21.67	23.08
Bra016304.1-P	Field mustard	cytosol	18.96	22.76
Bra028647.1-P	Field mustard	mitochondrion	20.09	20.37
Bra024664.1-P	Field mustard	cytosol	16.03	19.78
Bra039169.1-P	Field mustard	cytosol	19.64	18.47
Bra027244.1-P	Field mustard	cytosol	18.28	16.53
Bra017335.1-P	Field mustard	cytosol	18.74	15.63
Bra036349.1-P	Field mustard	cytosol, plastid	18.74	15.12
Bra025182.1-P	Field mustard	cytosol	17.83	14.93
Bra004253.1-P	Field mustard	plastid	16.7	14.29
Bra004074.1-P	Field mustard	cytosol, plastid	16.48	14.07
Bra019511.1-P	Field mustard	cytosol	25.51	11.81
Bra008895.1-P	Field mustard	nucleus	27.99	11.65
Bra006504.1-P	Field mustard	cytosol	28.22	11.33
Bra023374.1-P	Field mustard	nucleus	28.22	11.24
Bra038181.1-P	Field mustard	cytosol	24.83	10.98
Bra002235.1-P	Field mustard	nucleus	27.54	10.95
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	28.22	10.79
Bra003698.1-P	Field mustard	mitochondrion	26.19	10.77
Bra015708.1-P	Field mustard	cytosol	25.73	10.61
Bra016214.1-P	Field mustard	cytosol	25.06	10.57
Bra023740.1-P	Field mustard	cytosol	25.28	10.51
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	18.96	10.22
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	25.06	8.74

Protein Annotations

EnsemblPlants:Bra013002.1	EnsemblPlants:Bra013002.1-P	EnsemblPlantsGene:Bra013002	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PFAM:PF00415	PFscan:PS50012	PRINTS:PR00633	ScanProsite:PS00626
SEG:seg	SUPFAM:SSF50985	UniParc:UPI000254049C	UniProt:M4D942	MapMan:16.12.2.2.2	:

Description

AT5G60870 (E=2e-212) | regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA03:-:21093767..21095690

Molecular Weight (calculated)

46934.4 Da

IEP (calculated)

6.791

GRAVY (calculated)

-0.200

Length

443 amino acids

Sequence
(BLAST)

001: MAALSHRLRS NFTRRFSSTR NTQRSGGSTK VPTLYTSPEI ASDSTTLQLL SWGRGASGQL GGGIEEIRMY PSPVANLLLR PDQSFSLAQT PGRIDNGSGF
101: RVGVSSGLFH SGLTVDGDLW VWGKGDGGRL GFGQEDSVFV PKLNPRFEER SIRCVALGGL HSVALTHKGD VFTWGYGGFG ALGHSVYTRE LVPRRVEGSW
201: DCKISAIATS GTHTAAITES GELYMWGREE GDGRLGLGPG RGPNEGGGLS VPSKVKALSV PVASVSCGGF FTMALTQEGQ LWNWGANSNY ELGRGDNLGG
301: WEPMPVPSLE GVRITQIACG GYHSLALTEE GKVLSWGHGG HGQLGNASLR NQQVPTEIEA LADKKIVFIA CGGSSSAAIT DGGELWMWGN AKDFQLGVPG
401: LPEIQTSPVQ VNFLTEEDEL GPHKVISVSI GASHALCLVS RSH

Best Arabidopsis Sequence Match ( AT5G60870.1 )
(BLAST)

001: MAALSHRLRS FTRRFSSTRT TQRSGGGANT KVPILYTSPD IDSDPVTLQL FSWGRGASGQ LGGGIEEIRM YPSPVANLLF RSDQSFSLAQ TPGRIDADSS
101: SFRIGISCGL FHSGLTIDGD LWIWGKGDGG RLGFGQENSV FVPNLNPLFE EHSIRCIALG GLHSVALTHQ GDVFTWGYGG FGALGHKVYT RELVPRRVDD
201: SWDCKISAIA TSGTHTAAIT ESGELYMWGR EEGDGRLGLG PGRGPNEGGG LSVPSKVKAL TVPVASVSCG GFFTMALTKE GQLWNWGANS NYELGRGDNL
301: GGWEPMPVPS LEGVRITQIA CGGYHSLALT EEGKVLSWGH GGHGQLGSSS LRNQKVPTEI EALADKKIVF IASGGSSSAA ITDGGELWMW GNAKDFQLGV
401: PGLPEIQTTP VEVNFLTEED ECQPHKVISI SIGASHALCL VSRSP

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:TAIR;Acc:AT5G60870]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.