Factsheet for Bra038181.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31624	Canola	cytosol	96.71	98.58
AT1G65920.1	Thale cress	cytosol	84.33	84.0
VIT_04s0079g00290.t01	Wine grape	cytosol	49.6	49.45
Solyc02g036390.1.1	Tomato	cytosol	37.43	47.77
KRG98005	Soybean	cytosol	50.0	46.82
KRH30884	Soybean	cytosol	49.9	46.55
PGSC0003DMT400043094	Potato	nucleus	49.3	45.91
GSMUA_Achr1P02140_001	Banana	cytosol	39.82	44.68
GSMUA_Achr5P11650_001	Banana	cytosol	40.82	42.16
Zm00001d017641_P004	Maize	cytosol	35.63	41.46
TraesCS6A01G261000.1	Wheat	cytosol	36.43	39.98
TraesCS2B01G478900.1	Wheat	cytosol, nucleus, peroxisome	40.72	39.57
TraesCS2D01G457000.1	Wheat	cytosol, nucleus, peroxisome	40.22	39.39
TraesCS2A01G456700.1	Wheat	cytosol, nucleus, peroxisome	40.72	38.78
TraesCS6D01G241800.1	Wheat	cytosol	39.92	37.7
TraesCS6B01G288400.1	Wheat	cytosol	39.92	37.49
KXG26989	Sorghum	cytosol	39.72	37.3
Os04t0583700-00	Rice	cytosol	38.42	37.23
HORVU6Hr1G066460.5	Barley	cytosol	39.22	36.83
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	38.92	36.35
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	40.22	36.31
Zm00001d051479_P005	Maize	nucleus	38.82	36.15
Bra008895.1-P	Field mustard	nucleus	38.22	36.0
Bra006504.1-P	Field mustard	cytosol	38.92	35.36
HORVU2Hr1G104550.10	Barley	cytosol, nucleus, plastid	40.42	35.06
Bra016214.1-P	Field mustard	cytosol	36.63	34.95
Bra003698.1-P	Field mustard	mitochondrion	37.33	34.73
Bra015708.1-P	Field mustard	cytosol	37.13	34.64
Bra023374.1-P	Field mustard	nucleus	38.22	34.44
Bra029198.1-P	Field mustard	cytosol	13.77	33.5
Bra002235.1-P	Field mustard	nucleus	37.23	33.48
Bra023740.1-P	Field mustard	cytosol	35.53	33.4
Bra037755.1-P	Field mustard	cytosol	13.77	33.17
Bra024242.1-P	Field mustard	cytosol	13.37	32.6
Bra019511.1-P	Field mustard	cytosol	29.64	31.03
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	34.73	30.05
Bra016304.1-P	Field mustard	cytosol	10.58	28.73
Bra024664.1-P	Field mustard	cytosol	10.08	28.13
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	33.73	26.61
Bra039169.1-P	Field mustard	cytosol	12.28	26.11
Bra028647.1-P	Field mustard	mitochondrion	11.18	25.63
Bra013002.1-P	Field mustard	mitochondrion	10.98	24.83
Bra021435.1-P	Field mustard	cytosol	9.38	23.98
Solyc02g081250.1.1	Tomato	cytosol	49.8	23.91
Bra004253.1-P	Field mustard	plastid	12.08	23.36
Bra004074.1-P	Field mustard	cytosol, plastid	11.98	23.12
Bra008654.1-P	Field mustard	cytosol	9.08	22.92
Bra027244.1-P	Field mustard	cytosol	11.18	22.86
Bra017335.1-P	Field mustard	cytosol	11.48	21.66
Bra025182.1-P	Field mustard	cytosol	11.18	21.17
Bra036349.1-P	Field mustard	cytosol, plastid	10.58	19.31
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	11.38	13.87

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra038181	EnsemblPlants:Bra038181.1
EnsemblPlants:Bra038181.1-P	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005886	GO:GO:0016020
GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083
InterPro:IPR013591	InterPro:IPR017455	UniProt:M4FAR6	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381
PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012
PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF177	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens
SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI000253E528	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT1G65920 (E=0.0) | regulator of chromosome condensation (RCC1) family protein / zinc finger protein-related

Coordinates

chrScaffold000141:+:45244..50943

Molecular Weight (calculated)

110452.0 Da

IEP (calculated)

8.787

GRAVY (calculated)

-0.449

Length

1002 amino acids

Sequence
(BLAST)

0001: MGEQHISATV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CPFKLSMDEK YLIWYSGQDE RQLRLSSVIT IVRGQITPKF EKQAQPDRKE QSFSLVYANG
0101: EYTLDLICKD KAQADSWFKG LRAVITKHHN ARSSVNLRTS RGAQSCINSP AGFIRRKQNL GLVEETPDFT QIRSLCASPS TLLEERCLWL SGSSDSFYSA
0201: ESAGSDGFGP VSPYYEADCD QTGSELSKKH SSQRFYVSPP HTVTQPTARS NVLKDVMIWG ATRGLIEGSK NQNDALSPQL LESATMFDVQ SISLGAKHAA
0301: LVTRQGEVFC WGNGNSGKLG LKVNLDIDHP KRVESLEGVA VGSVACSDHQ TCAVTESGEL YLWGIDGGTI GESGRQFLTR KIADLFGGSL RVYSVACGAW
0401: HTAIVTFSGQ LYTYGSGTFG VLGHGSLESV TKPKEVESLK RMKVVSVSCG PWHTAAIVET STIDRKYHNA KSCGKLFTWG DGDKGRLGHV DSKRKLVPTC
0501: VSELIDQDFV KVSCGWTLTV ALSNRGTVYT MGSSIHGQLG CPRAKDKSVN TVLGNLTRQF VKEIACGSHH VAVLTSFGNV YTWGKGANGQ LGLGDVRDRN
0601: SPVLVESLGD RLVESVACGL SLTAAICLHK DISLTDQSAC SSCKSAFGFT RKKHNCYNCG LLFCNACSSK KAVNASLAPN KGKLSRVCDS CFNHLWRITE
0701: FSNKVKMDNR TPRMQLVTNA RRLSGEWTET ESQNQIQNIP QANSSSDGQP RWGQVSAPSL FLFDKMSLSL TSPEDISVSS RRPSSTKIST SSETNKIFID
0801: EIERLKAEVR NLQKQCELGN DKIEECQREF EKTSQVAKEE AEKAKVAKEI IKAMASRLQT NKEKPNNPKT GIACNPSKVS PIFDDDSVSA PYFTPITTTC
0901: SQSKDKQIVE KCSSRESNIR LLVNASPAIT RTGYMQNGTQ ESTAEQVEQY EPGVYITFTA LPCGQKTLKR VRFSRKRFSE KEAQRWWEEK QVLVYNQYDA
1001: EA

Best Arabidopsis Sequence Match ( AT1G65920.1 )
(BLAST)

0001: MGEQQISVTV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CPFKLSMDEK YLIWYSGEEE RQLRLSSVIT IVRGQITPNF QKQAQSDRKE QSFSLIYANG
0101: EHTLDLICKD KAQADSWFKG LRAVITKHHN IRNSVNHRSS RGAQSCINSP AGFMRRKQNL GLLEETPDVT QIRSLCGSPS TLLEERCLSN GLSCSSDSFA
0201: ESDALGPVSS YYETDYDFRN SDCDRSTGSE LCRFSSQRFA ASPPLSIITQ PVTRSNVLKD IMIWGAITGL IDGSKNQNDA LSPKLLESAT MFDVQSISLG
0301: AKHAALVTRQ GEVFCWGNGN SGKLGLKVNI DIDHPKRVES LEDVAVRSVA CSDHQTCAVT ESGELYLWGI DGGTIEQSGS QFLTRKISDV LGGSLTVLSV
0401: ACGAWHTAIV TSSGQLFTYG SGTFGVLGHG SLESVTKPKE VESLRRMKVI SVSCGPWHTA AIVETANDRK FYNAKSCGKL FTWGDGDKGR LGHADSKRKL
0501: VPTCVTELID HDFIKVSCGW TLTVALSISG TVYTMGSSIH GQLGCPRAKD KSVNVVLGNL TRQFVKDIAS GSHHVAVLTS FGNVYTWGKG MNGQLGLGDV
0601: RDRNSPVLVE PLGDRLVESI ACGLNLTAAI CLHKEISLND QTACSSCKSA FGFTRRKHNC YNCGLLFCNA CSSKKAVNAS LAPNKSKLSR VCDSCFDHLW
0701: SITEFSRNVK MDNHTPRMQM VTRRVSEDLT EKQSENEMQN LPQANRSSDG QPRWGQVSGP SLFRFDKIST SSSLNLSVSA RRTSSTKIST SSESNKILTE
0801: EIERLKAVIK NLQRQCELGN EKMEECQQEL DKTWEVAKEE AEKSKAAKEI IKALASKLQA NKEKPSNPLK TGIACNPSQV SPIFDDSMSI PYLTPITTAR
0901: SQHETKQHVE KCVTKSSNRD SNIKLLVDAS PAITRTGYLQ NETQDSSAEQ VEQYEPGVYI TFTALPCGQK TLKRVRFSRK RFSEKEAQRW WEEKQVLVYN
1001: KYDAEI

Arabidopsis Description

F12P19.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.