Factsheet for Bra021109.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum

Predictor Summary:

extracellular 7
golgi 5
plasma membrane 6
endoplasmic reticulum 6
vacuole 5
nucleus 1
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, extracellular, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20113	Canola	endoplasmic reticulum, extracellular	98.18	97.82
Bra027244.1-P	Field mustard	cytosol	54.87	92.04
AT3G15430.2	Thale cress	cytosol	52.8	88.93
PGSC0003DMT400003817	Potato	cytosol	33.58	72.25
KRH22127	Soybean	cytosol	41.48	70.31
VIT_19s0014g03080.t01	Wine grape	cytosol	41.97	70.12
PGSC0003DMT400032346	Potato	plasma membrane	40.39	68.88
Solyc07g063300.2.1	Tomato	plasma membrane	40.39	68.31
KRH27216	Soybean	cytosol	41.0	66.73
GSMUA_Achr5P12060_001	Banana	mitochondrion	34.79	63.27
Zm00001d019595_P001	Maize	cytosol	36.74	62.53
KXG35074	Sorghum	cytosol	36.74	62.53
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.23	62.2
TraesCS2B01G254900.2	Wheat	cytosol	36.5	61.98
TraesCS2D01G241400.2	Wheat	cytosol	36.5	61.98
Zm00001d005395_P001	Maize	cytosol	36.37	61.9
TraesCS2A01G236300.4	Wheat	cytosol	36.25	60.69
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	35.64	59.55
KRH49501	Soybean	cytosol	11.68	55.49
Bra024242.1-P	Field mustard	cytosol	13.02	26.03
Bra037755.1-P	Field mustard	cytosol	13.02	25.72
Bra029198.1-P	Field mustard	cytosol	12.77	25.49
Bra004253.1-P	Field mustard	plastid	15.69	24.9
Bra017335.1-P	Field mustard	cytosol	16.06	24.86
Bra004074.1-P	Field mustard	cytosol, plastid	15.57	24.66
Bra025182.1-P	Field mustard	cytosol	15.69	24.39
Bra036349.1-P	Field mustard	cytosol, plastid	15.57	23.32
Bra016304.1-P	Field mustard	cytosol	10.46	23.31
Bra021435.1-P	Field mustard	cytosol	10.95	22.96
Bra008654.1-P	Field mustard	cytosol	10.83	22.42
Bra028647.1-P	Field mustard	mitochondrion	10.83	20.37
Bra024664.1-P	Field mustard	cytosol	8.64	19.78
Bra039169.1-P	Field mustard	cytosol	11.07	19.32
Bra013002.1-P	Field mustard	mitochondrion	10.22	18.96
Bra008895.1-P	Field mustard	nucleus	15.69	12.12
Bra015708.1-P	Field mustard	cytosol	15.69	12.01
Bra016214.1-P	Field mustard	cytosol	15.21	11.9
Bra003698.1-P	Field mustard	mitochondrion	15.33	11.7
Bra023740.1-P	Field mustard	cytosol	15.09	11.63
Bra006504.1-P	Field mustard	cytosol	15.57	11.6
Bra019511.1-P	Field mustard	cytosol	13.5	11.6
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	17.88	11.57
Bra023374.1-P	Field mustard	nucleus	15.45	11.42
Bra002235.1-P	Field mustard	nucleus	15.45	11.4
Bra038181.1-P	Field mustard	cytosol	13.87	11.38
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	15.82	11.23

Protein Annotations

Gene3D:2.130.10.30	MapMan:35.1	EnsemblPlantsGene:Bra021109	EnsemblPlants:Bra021109.1	EnsemblPlants:Bra021109.1-P	InterPro:IPR000408
InterPro:IPR009091	UniProt:M4DX63	PFAM:PF00415	PFAM:PF13540	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF302	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985
SignalP:SignalP-noTM	UniParc:UPI0002543F91	SEG:seg	:	:	:

Description

AT3G15430 (E=7e-260) | regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA01:-:23941437..23945430

Molecular Weight (calculated)

87539.8 Da

IEP (calculated)

7.489

GRAVY (calculated)

-0.272

Length

822 amino acids

Sequence
(BLAST)

001: MAKGHQGKCF GFVLLLCFFS STFARRILKD LDHVVKPGKV SLREQDHGLF SLEPDHKVKP GHNPQSAWWG EPEEPEDKVK PDHKLQSMWR ELEEPDPEKK
101: HAHKVMPDYK EKLNDGGKEK IDDIEKPDHI VKPNYKEKLN DKEKIDGIEK PDHTVKPMGY GYGVGYGSGG SGFGEGIGSS GGSGFGEGIG SSGGSGFGEG
201: IGSSGGSGFG EGIGYGDGSG VGIGEGRGSG YGQPNCGPVR GAPGRGFGEG IGRGSGSGEG IGIGRGGSGS TGVPSVVVPP ITVPGTTIPP ITVPGTHIPG
301: FTIPGVTVPG FGTGGGCQTG EFRWSLETLF FKKKAERNWL VSLEDLPSHL ILEVLTSGRL NAVDLLSLEL TSKVFGGSSG LLYPLKFRSL ADYAASRLCY
401: VHPVYAGMGL TTQKELFANC EGNWKRLLRF LQSVDQSSDM VQTSAGNMQV TTGRYHTLLI NNSKVYSCGS SLSGVLAHGP ETTQCVAFTP IEFPFSAKVA
501: QVSATHNHSA FVLQSGEVLT CGDNSSHCCG HLDTSRPIFR PKLVEALKGT PCKQVAAGLH FSVFLSREGR VFTCGSNTHG QLGHGDTLDS PVPRAVEFFQ
601: SVGPVVQIAT GPSYVLAVTQ DGSVYSFGSG STFCLGHGEQ QDEHQPRVIQ AFKRRGVHIL RVSAGDEHAV ALDSNGRVYT WGKGYCGALG HGDENDKITP
701: QVLVSLNNCL AVQVCARKRK TFVLVEGGVL YGFGWMGFGS LGFPDRGASD KVLRPRVLES LKQHRVSQVS TGLYHTIVVT QGGRIFGFGD NERAQLGHDS
801: LRTCLEPTEI FLHCGHSCSQ VC

Best Arabidopsis Sequence Match ( AT3G15430.6 )
(BLAST)

001: MADRNCLISF EDLPSHLILE VLTSGRLSAV DLLSLELTSK VFGGSHGFYP LKFRSLADYA ASQLCSMHPV YVGMGLTTQK ELFANCEGNW KRLFSFLQSV
101: EQSSDMVETS QGKMQIATGK YHTLLINNSK VYSCGVSLSG VLAHGSETTQ CVAFTPIEFP FPAQVAQVSA TQNHSAFVLQ SGQVLTCGDN SSHCCGHLDT
201: SRPIFRPKLV EALKGTPCKQ VAAGLHFTVF LSREGHAYTC GSNTHGQLGH GDTLDRPVPK VVEFLKTIGP VVQIAAGPSY VLAVTQDGSV YSFGSGSNFC
301: LGHGEQQDEL QPRVIQAFKR KGIHILRVSA GDEHAVALDS NGRVYTWGKG YCGALGHGDE NDKITPQVLV NLNNCLAVQV CARKRKTFVL VEGGLLYGFG
401: WMGFGSLGFP DRGVSDKVLR PRVLECLKPH RVSQVSTGLY HTIVVTQRGR IFGFGDNERA QLGHDSLRGC LEPTEIFLHC GRSRSRLC

Arabidopsis Description

MJK13.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9LDU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.