Factsheet for Bra014931.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85076	Canola	cytosol	77.64	94.99
CDX77534	Canola	cytosol	79.61	91.0
Bra023740.1-P	Field mustard	cytosol	73.54	87.62
AT3G23270.2	Thale cress	cytosol	70.24	84.63
VIT_05s0049g01140.t01	Wine grape	cytosol	52.05	62.3
PGSC0003DMT400034994	Potato	cytosol	48.11	59.03
Solyc03g005590.1.1	Tomato	cytosol, plastid	49.45	58.64
KRH40796	Soybean	cytosol	33.15	56.13
KRH00393	Soybean	cytosol	46.69	55.47
KRH69117	Soybean	cytosol	45.51	53.62
KRH31700	Soybean	cytosol	44.88	52.88
Os01t0700200-01	Rice	cytosol	41.57	50.57
TraesCS1B01G384600.1	Wheat	cytosol	41.65	50.43
TraesCS1A01G366800.1	Wheat	cytosol	41.42	50.38
TraesCS1D01G372300.1	Wheat	cytosol	41.65	50.24
HORVU1Hr1G078890.1	Barley	cytosol	41.5	50.14
EES19890	Sorghum	cytosol	39.92	49.71
Zm00001d011660_P003	Maize	cytosol	40.71	48.91
Os05t0545200-00	Rice	cytosol	38.98	48.82
Zm00001d038882_P002	Maize	cytosol	40.39	48.63
EES01332	Sorghum	cytosol	40.31	48.48
Bra016214.1-P	Field mustard	cytosol	39.21	47.43
Bra015708.1-P	Field mustard	cytosol	39.84	47.11
Bra003698.1-P	Field mustard	mitochondrion	39.84	46.98
KRH65503	Soybean	cytosol, mitochondrion, nucleus	36.06	43.79
Bra008895.1-P	Field mustard	nucleus	35.28	42.11
Bra006504.1-P	Field mustard	cytosol	35.04	40.34
Bra023374.1-P	Field mustard	nucleus	35.12	40.11
Bra002235.1-P	Field mustard	nucleus	34.88	39.77
Bra019511.1-P	Field mustard	cytosol	25.91	34.38
Bra038181.1-P	Field mustard	cytosol	26.61	33.73
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	30.47	33.42
Bra024242.1-P	Field mustard	cytosol	10.79	33.33
Bra029198.1-P	Field mustard	cytosol	10.63	32.77
Bra016304.1-P	Field mustard	cytosol	9.45	32.52
Bra037755.1-P	Field mustard	cytosol	10.63	32.45
Bra024664.1-P	Field mustard	cytosol	8.58	30.36
Bra008654.1-P	Field mustard	cytosol	8.58	27.46
Bra021435.1-P	Field mustard	cytosol	8.27	26.79
Bra028647.1-P	Field mustard	mitochondrion	9.13	26.54
Bra027244.1-P	Field mustard	cytosol	9.76	25.31
Bra013002.1-P	Field mustard	mitochondrion	8.74	25.06
Bra039169.1-P	Field mustard	cytosol	9.29	25.05
Bra004253.1-P	Field mustard	plastid	9.45	23.17
Bra017335.1-P	Field mustard	cytosol	9.61	22.98
Bra004074.1-P	Field mustard	cytosol, plastid	9.13	22.35
Bra025182.1-P	Field mustard	cytosol	9.21	22.12
Bra036349.1-P	Field mustard	cytosol, plastid	9.06	20.95
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	11.57	17.88

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	EnsemblPlantsGene:Bra014931
EnsemblPlants:Bra014931.1	EnsemblPlants:Bra014931.1-P	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR009091
InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	UniProt:M4DEK9	PFAM:PF00415
PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	InterPro:PH-like_dom_sf	PRINTS:PR00633	PFscan:PS50012
PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF87	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens
SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	TMHMM:TMhelix	UniParc:UPI0002540EC3
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT3G23270 (E=0.0) | regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA07:-:5125083..5131021

Molecular Weight (calculated)

137454.0 Da

IEP (calculated)

8.594

GRAVY (calculated)

-0.257

Length

1270 amino acids

Sequence
(BLAST)

0001: MWQVRSRFGL CLASSVLLED GFLVVMPFSS FVPTLLFGGF SNLCGGVLRG SGARVVALLV GVLPVLVVVT GDSASVSFCF SASCCGFFPK FLGTGVVALR
0101: CSVSFSYERW CFVTVSGSGW VFDDEQTLVG LSAFLLAWWL FSGGGFSTGL TALYGLSGST GVHGPGLDSW RQQSLVLFLE RRHRRLCDPP RAAGFEPFGS
0201: RLQQGMRAPF SLVSRGNWMF ILFTPSPLVL HCFINVYGMA DPASYVYHER DIDQALIVLK KGTQLVKYSR KGKPKFRAFR LSPDEKTLIW FSHGEEKGLK
0301: LSEVSRVVPG QRTICKDKAE TEIWFAGLKY LIERSRNRRA RSEIPEINDS DYFSTGRQSI DVFPNNIPRG RTSIDLGSDV GYERGNMLRP STDGFRISVS
0401: STPSCSSGGS GPDDIESLGD VYVWGEVWSD GILPDGTVTK ETVKTDVLTP RPLESNVVLD VHQIVCGVRR VALVTRQGEL FAWGGAAGGR LGHGIQVDIS
0501: RPKLVEFLAL TNIDFVACGE YHTCVVSTSG DLFSWGDGIH NVGLLGHGSD ISHWIPKRVS GPLEGLQVLS VACGTWHSAL ATANGKLFTF GDGAFGVLGH
0601: GNRESVSCPK EVQSLNGLKT VKVACNIWHT VAIVEVMGQT GTSMSSRKLF TWGDGDKNRL GHGNKETYLL PTCVSSLIDY NFHQIACGHT FTVALTTSGH
0701: VFTMGGTSHG QLGNSISDGK LPCLVQDRLV GEFVEEIACG DHHVAVLTSR SEVFTWGKGA NGRLGHGDTD DRRTPTLVEA LRDRHVKSLS CGSNFTSSIC
0801: IHKWVSGADQ SICSGCRQAF GFTRKRHNCY NCGLVHCHAC SSKKALKAAL APTPGKPHRV CDACYSKLKA AESGYISNGN RTNVATPGRS MDGSVRIDKG
0901: TTRSSKVLLT GNNTESGKTS RLGVRPDASS VRASQVPSLQ QLKDIAFPTS LTAIQNALKP VAPAAVPARL LAGPVASPPP ARSSSPLPVR SSSPYARRSS
1001: PPRTSGFSRS VIDSLKKTNE VMNQEMTKLQ SQVKNLKQKC NNQGTEIQRF QKAAKEAFEL AAKQSSKHKS ATEALKSVAE QLKGLKEKLP PEVSESEAFD
1101: SINSQAEAYL NANEVTETSL LTTSILDQQE TSPTGNTQDQ KIDEQVSSNS SISDTSNSSK PVPTESSSSS SSKTGGKESK EQFEPGVYVT FAVDVNGNKI
1201: FRRVRFSKKR FDEHQAEDWW TKNKDRLLKW YSPNSSSSPV ASDSSIAPPP PSEPPSDPSV SEKDNEAEAD

Best Arabidopsis Sequence Match ( AT3G23270.2 )
(BLAST)

0001: MADPASCYIY HERDVDQALV VLKKGTQLLK YSRKGKPKFR AFRLSPDEKT LIWFSRGEEK GLKLFEVSRI VPGQRTAVFK RFLRPEKDHL SFSLLYNNRE
0101: RSLDLICKDK AETEVWFAAL KFLIEKSRNR RARSEIPEIH DSDTFSVGRQ SIDFVPSNIP RGRTSIDLGY QNNSDVGYER GNMLRPSTDG FRISVSSTPS
0201: CSSGGSGPDD IESLGDVYVW GEVWTEGILP DGTASNETVK TDVLTPRPLE SNVVLDVHQI VCGVRHVALV TRQGEVFTWG EEVGGRLGHG IQVDISRPKL
0301: VEFLALTNID FVACGEYHTC VVSTSGDLFS WGDGIHNVGL LGHGSDISHW IPKRVSGPLE GLQVLSVACG TWHSALATAN GKLFTFGDGA FGVLGHGNRE
0401: SVSYPKEVQS LNGLKTVKVA CSIWHTAAIV EVMGQTATSM SSRKLFTWGD GDKNRLGHGN KETYLLPTCV SSLIDYNFHK IACGHTFTVA LTTSGHVFTM
0501: GGTAHGQLGN SISDGKLPCL VQDRLVGEFV EEIACGAHHV AVLTSRSEVF TWGKGANGRL GHGDTEDKRT PTLVEALRDR HVKSLSCGSN FTSSICIHKW
0601: VSGADQSICS GCRQAFGFTR KRHNCYNCGL VHCHACSSKK ALKAALAPTP GKPHRVCDAC YSKLKAAESG YSSNVNRNVA TPGRSIDGSV RTDRETTRSS
0701: KVLLSANKNS VMSSSRPGFT PESSNARASQ VPSLQQLKDI AFPSSLSAIQ NAFKPVVAPT TTPPRTLVIG PSSPSPPPPP RSSSPYARRP SPPRTSGFSR
0801: SVIDSLRKTN EVMNQEMTKL HSQVKNLKQR CNNQGTEIER FQKAAKDASE LAARQSSKHK AATEALKSVA EQLKELKEKL PPEVSESEAF ESINSQAEAY
0901: LNANKVSETS PLTTSGQEQE TYQKTEEQVP SNSSITETSS SSRAPSTEAS SSRISGKESK EQFEPGVYVT YEVDMNGNKI FRRVRFSKKR FDEHQAEDWW
1001: TKNKDRLLKC YSSNSSSSSS SSNPTASDSP VAPQPPSDPS VPEQSNEKEP DSET

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.