Factsheet for AT3G23270.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66504	Canola	cytosol	70.97	90.67
CDX85076	Canola	cytosol	86.05	87.38
Bra023740.1-P	Field mustard	cytosol	87.19	86.21
CDX77534	Canola	cytosol	85.48	81.1
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	84.63	70.24
AT4G14368.1	Thale cress	cytosol	72.77	69.35
VIT_05s0049g01140.t01	Wine grape	cytosol	65.56	65.13
PGSC0003DMT400034994	Potato	cytosol	60.44	61.55
Solyc03g005590.1.1	Tomato	cytosol, plastid	62.24	61.25
KRH00393	Soybean	cytosol	58.06	57.25
KRH69117	Soybean	cytosol	57.59	56.31
KRH31700	Soybean	cytosol	56.55	55.29
KRH40796	Soybean	cytosol	39.28	55.2
Os01t0700200-01	Rice	cytosol	51.9	52.39
TraesCS1A01G366800.1	Wheat	cytosol	51.9	52.39
TraesCS1B01G384600.1	Wheat	cytosol	52.09	52.34
HORVU1Hr1G078890.1	Barley	cytosol	52.18	52.33
TraesCS1D01G372300.1	Wheat	cytosol	52.18	52.23
EES19890	Sorghum	cytosol	50.19	51.86
Os05t0545200-00	Rice	cytosol	49.53	51.48
Zm00001d011660_P003	Maize	cytosol	50.85	50.71
Zm00001d038882_P002	Maize	cytosol	50.57	50.52
EES01332	Sorghum	cytosol	50.57	50.47
AT1G76950.1	Thale cress	cytosol	51.23	48.96
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	49.91	48.79
KRH65503	Soybean	cytosol, mitochondrion, nucleus	43.74	44.07
AT5G12350.1	Thale cress	nucleus	44.5	43.63
AT5G19420.2	Thale cress	mitochondrion	44.31	41.0
AT1G69710.1	Thale cress	cytosol	39.56	40.06
AT1G65920.1	Thale cress	cytosol	33.11	34.69
AT1G27060.1	Thale cress	cytosol	12.62	34.46
AT3G47660.4	Thale cress	cytosol	31.97	34.04
AT5G63860.1	Thale cress	cytosol	13.47	32.27
AT5G16040.1	Thale cress	cytosol	10.44	27.78
AT3G02510.1	Thale cress	cytosol	10.34	27.74
AT5G08710.1	Thale cress	mitochondrion	11.2	27.19
AT3G15430.2	Thale cress	cytosol	11.76	25.41
AT3G26100.5	Thale cress	cytosol, plastid	12.52	24.81
AT3G02300.2	Thale cress	cytosol	11.1	24.27
AT5G60870.2	Thale cress	mitochondrion	10.06	23.45

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:821906	UniProt:A0A1I9LTP1
ProteinID:ANM65949.1	ArrayExpress:AT3G23270	EnsemblPlantsGene:AT3G23270	RefSeq:AT3G23270	TAIR:AT3G23270	RefSeq:AT3G23270-TAIR-G
EnsemblPlants:AT3G23270.2	Unigene:At.53452	InterPro:BRX_N	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993
InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	RefSeq:NP_001327882.1	PFAM:PF00415	PFAM:PF01363
PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633
PFscan:PS50003	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF87
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903
UniParc:UPI000848C7EB	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTP1]

Coordinates

chr3:+:8316218..8320487

Molecular Weight (calculated)

115227.0 Da

IEP (calculated)

8.561

GRAVY (calculated)

-0.514

Length

1054 amino acids

Sequence
(BLAST)

0001: MADPASCYIY HERDVDQALV VLKKGTQLLK YSRKGKPKFR AFRLSPDEKT LIWFSRGEEK GLKLFEVSRI VPGQRTAVFK RFLRPEKDHL SFSLLYNNRE
0101: RSLDLICKDK AETEVWFAAL KFLIEKSRNR RARSEIPEIH DSDTFSVGRQ SIDFVPSNIP RGRTSIDLGY QNNSDVGYER GNMLRPSTDG FRISVSSTPS
0201: CSSGGSGPDD IESLGDVYVW GEVWTEGILP DGTASNETVK TDVLTPRPLE SNVVLDVHQI VCGVRHVALV TRQGEVFTWG EEVGGRLGHG IQVDISRPKL
0301: VEFLALTNID FVACGEYHTC VVSTSGDLFS WGDGIHNVGL LGHGSDISHW IPKRVSGPLE GLQVLSVACG TWHSALATAN GKLFTFGDGA FGVLGHGNRE
0401: SVSYPKEVQS LNGLKTVKVA CSIWHTAAIV EVMGQTATSM SSRKLFTWGD GDKNRLGHGN KETYLLPTCV SSLIDYNFHK IACGHTFTVA LTTSGHVFTM
0501: GGTAHGQLGN SISDGKLPCL VQDRLVGEFV EEIACGAHHV AVLTSRSEVF TWGKGANGRL GHGDTEDKRT PTLVEALRDR HVKSLSCGSN FTSSICIHKW
0601: VSGADQSICS GCRQAFGFTR KRHNCYNCGL VHCHACSSKK ALKAALAPTP GKPHRVCDAC YSKLKAAESG YSSNVNRNVA TPGRSIDGSV RTDRETTRSS
0701: KVLLSANKNS VMSSSRPGFT PESSNARASQ VPSLQQLKDI AFPSSLSAIQ NAFKPVVAPT TTPPRTLVIG PSSPSPPPPP RSSSPYARRP SPPRTSGFSR
0801: SVIDSLRKTN EVMNQEMTKL HSQVKNLKQR CNNQGTEIER FQKAAKDASE LAARQSSKHK AATEALKSVA EQLKELKEKL PPEVSESEAF ESINSQAEAY
0901: LNANKVSETS PLTTSGQEQE TYQKTEEQVP SNSSITETSS SSRAPSTEAS SSRISGKESK EQFEPGVYVT YEVDMNGNKI FRRVRFSKKR FDEHQAEDWW
1001: TKNKDRLLKC YSSNSSSSSS SSNPTASDSP VAPQPPSDPS VPEQSNEKEP DSET

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.