Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038882_P002 | Maize | cytosol | 91.76 | 88.72 |
| Os05t0545200-00 | Rice | cytosol | 75.78 | 76.23 |
| TraesCS1A01G366800.1 | Wheat | cytosol | 76.96 | 75.19 |
| HORVU1Hr1G078890.1 | Barley | cytosol | 76.86 | 74.6 |
| TraesCS1D01G372300.1 | Wheat | cytosol | 76.86 | 74.45 |
| TraesCS1B01G384600.1 | Wheat | cytosol | 76.57 | 74.45 |
| EES01332 | Sorghum | cytosol | 69.31 | 66.95 |
| CDY66504 | Canola | cytosol | 47.06 | 58.18 |
| VIT_05s0049g01140.t01 | Wine grape | cytosol | 56.27 | 54.1 |
| PGSC0003DMT400034994 | Potato | cytosol | 52.84 | 52.08 |
| Solyc03g005590.1.1 | Tomato | cytosol, plastid | 54.61 | 52.01 |
| CDY12764 | Canola | cytosol | 53.43 | 52.0 |
| CDX85076 | Canola | cytosol | 51.76 | 50.87 |
| KRH00393 | Soybean | cytosol | 53.04 | 50.61 |
| AT3G23270.2 | Thale cress | cytosol | 51.86 | 50.19 |
| KRH31700 | Soybean | cytosol | 52.94 | 50.09 |
| KRH69117 | Soybean | cytosol | 52.65 | 49.81 |
| Bra023740.1-P | Field mustard | cytosol | 51.96 | 49.72 |
| KRH40796 | Soybean | cytosol | 35.88 | 48.8 |
| CDY49416 | Canola | cytosol | 53.33 | 48.61 |
| AT4G14368.1 | Thale cress | cytosol | 51.96 | 47.92 |
| CDX77534 | Canola | cytosol | 51.57 | 47.34 |
| EES18851 | Sorghum | cytosol, plastid | 40.69 | 45.31 |
| KXG34192 | Sorghum | cytosol | 40.49 | 45.29 |
| EES13137 | Sorghum | cytosol | 46.27 | 44.36 |
| KXG34127 | Sorghum | cytosol | 38.24 | 42.3 |
| Bra014931.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 49.71 | 39.92 |
| KRH65503 | Soybean | cytosol, mitochondrion, nucleus | 40.69 | 39.67 |
| OQU85620 | Sorghum | cytosol, mitochondrion, nucleus | 33.73 | 32.06 |
| KXG26989 | Sorghum | cytosol | 33.33 | 31.86 |
| EES10837 | Sorghum | cytosol | 13.73 | 31.6 |
| EES09892 | Sorghum | mitochondrion | 11.86 | 28.95 |
| OQU87663 | Sorghum | cytosol | 11.18 | 28.22 |
| KXG25196 | Sorghum | cytosol | 10.69 | 27.88 |
| EER97183 | Sorghum | mitochondrion | 11.57 | 27.31 |
| KXG35074 | Sorghum | cytosol | 12.25 | 25.88 |
| OQU91404 | Sorghum | cytosol | 12.06 | 25.41 |
| EES07101 | Sorghum | cytosol, plastid | 12.65 | 24.11 |
| KXG26580 | Sorghum | cytosol | 11.27 | 21.42 |
| EES12399 | Sorghum | cytosol, plastid | 10.78 | 20.79 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:8069001 | InterPro:BRX_N |
| InterPro:Brevis_radix_dom | UniProt:C5YUX6 | ncoils:Coil | EnsemblPlants:EES19890 | ProteinID:EES19890 | ProteinID:EES19890.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:IPR011993 |
| InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 | ProteinID:KXG22457.1 | PFAM:PF00415 | PFAM:PF01363 |
| PFAM:PF08381 | PFAM:PF13713 | InterPro:PH-like_dom_sf | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 |
| PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF238 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens |
| SMART:SM00064 | EnsemblPlantsGene:SORBI_3009G217400 | SUPFAM:SSF50729 | SUPFAM:SSF50985 | SUPFAM:SSF57903 | UniParc:UPI0001A891E0 |
| RefSeq:XP_002441460.1 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
hypothetical protein
Coordinates
chr9:-:56171409..56176011
Molecular Weight (calculated)
111546.0 Da
IEP (calculated)
8.584
GRAVY (calculated)
-0.430
Length
1020 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTPDDNALIT LKKGSNLIKY SRKGRPKIRE FRLSSDETSL IWHSHSKVKH LVLSSVSRII PGQRTAVFRR FLRPEKDYLS FSLIYKNGQR SLDLVCKDQA
0101: EVEVWFSTLE TLITSCRKSY SVDGPSDRLS ISDEVSHYQD NAFHDTTLDI ASSITRTFNS AGYSTNNSLN SAKTDVVSDR ANMLRASTDS SRLSISSAPS
0201: SSSQGSGQDD IESLGDVYVW GEVWTDVIPA EGSTNYLCSK ADILIPKPLE SDVVLDVQQI ACGYRHIALT TRQGEVFAWG EELGGRLGHG TDADISRPKL
0301: VEALAVSNVE YIACGEFHTC AVTASGDLYT WGDGYYNVGL LGNGAGASHW LPKRVSGPLE GVQVLSVSCG SWHSALTTSS GKVFTFGDGT FGALGHGKRE
0401: TVGYPKEVEA LSGFRTMKVA CGLWHSAAIV ESSNHVSINV ISRKLYTWGA GDKNQLGHGD KDSRLVPTCV QSLIDYSFHQ VACGHSMTIA LSTSGHVFTM
0501: GSSSNGQLGN PKSDGKQPIP VQDRLSGELV EEISCGSCHV AVLTSRSEVY TWGMGANGRL GHGGVEDKKK PTLVEALKDR HVKSIACGSN FTTCICIHKW
0601: VSGADQSVCS GCRQPFGFTR KRHNCYNCGL VHCHACSSRK VLKAALAPTP GKPHRVCDSC FMKLKAADTS NNSSHGKRNA IARRSVDSKD RSERPEIRPS
0701: RLATGSTAEP LKQAEIKPVR NEIKPDPMST MRAPQVPSVL PFNNLAFGAT FGGPASLKPM VMAPMPMAMP MSQSPLTKKP CPPTTTPLCG KSETDNLKIA
0801: KQVLNEDIAK LQSQVNKLKQ KCDAQEEQLQ KAERRAENSN SIAAEESSRR NGVLEFIRFL DNELKSIADR VPSDVVDNLK TLQNHSERFL TEQGMRPLEV
0901: TGTHRKSASI GNFVMSQDGN AGTASSSTVS LASESPCHRI MENSSRANGD LAPKLGTHGE VQLIEQFEPG VYVTLIQLRD GTKVFKRVRF SKRRFAEQQA
1001: EEWWRENQER VFRKYNHPAN
0101: EVEVWFSTLE TLITSCRKSY SVDGPSDRLS ISDEVSHYQD NAFHDTTLDI ASSITRTFNS AGYSTNNSLN SAKTDVVSDR ANMLRASTDS SRLSISSAPS
0201: SSSQGSGQDD IESLGDVYVW GEVWTDVIPA EGSTNYLCSK ADILIPKPLE SDVVLDVQQI ACGYRHIALT TRQGEVFAWG EELGGRLGHG TDADISRPKL
0301: VEALAVSNVE YIACGEFHTC AVTASGDLYT WGDGYYNVGL LGNGAGASHW LPKRVSGPLE GVQVLSVSCG SWHSALTTSS GKVFTFGDGT FGALGHGKRE
0401: TVGYPKEVEA LSGFRTMKVA CGLWHSAAIV ESSNHVSINV ISRKLYTWGA GDKNQLGHGD KDSRLVPTCV QSLIDYSFHQ VACGHSMTIA LSTSGHVFTM
0501: GSSSNGQLGN PKSDGKQPIP VQDRLSGELV EEISCGSCHV AVLTSRSEVY TWGMGANGRL GHGGVEDKKK PTLVEALKDR HVKSIACGSN FTTCICIHKW
0601: VSGADQSVCS GCRQPFGFTR KRHNCYNCGL VHCHACSSRK VLKAALAPTP GKPHRVCDSC FMKLKAADTS NNSSHGKRNA IARRSVDSKD RSERPEIRPS
0701: RLATGSTAEP LKQAEIKPVR NEIKPDPMST MRAPQVPSVL PFNNLAFGAT FGGPASLKPM VMAPMPMAMP MSQSPLTKKP CPPTTTPLCG KSETDNLKIA
0801: KQVLNEDIAK LQSQVNKLKQ KCDAQEEQLQ KAERRAENSN SIAAEESSRR NGVLEFIRFL DNELKSIADR VPSDVVDNLK TLQNHSERFL TEQGMRPLEV
0901: TGTHRKSASI GNFVMSQDGN AGTASSSTVS LASESPCHRI MENSSRANGD LAPKLGTHGE VQLIEQFEPG VYVTLIQLRD GTKVFKRVRF SKRRFAEQQA
1001: EEWWRENQER VFRKYNHPAN
0001: MKTDGMADPS SYVNHDRDID QALVSLKKGT QLLKYSRKGR PKFRSFRLSP DETTLFWLSH GEEKGLKLAT VSRILPGQRT AVFRRYLRPE KDYLSFSLIY
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEVSIHDSDC FSTGRPSTAS IDFAPNNTRR GRTSIDLGIQ NSPTKFGSSD VGYERGNMLR
0201: PSTDGFRISV SSTPSCSTGT SGPDDIESLG DVYVWGEVWS DGISPDGVVN STTVKIDVLI PKPLESNVVL DVHQIACGVR HIALVTRQGE VFTWEEEAGG
0301: RLGHGIQVDV CRPKLVEFLA LTNIDFVACG EYHTCAVSTS GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT
0401: FGDGAFGVLG HGDRESVSYP KEVKMLSGLK TLKVACGVWH TVAIVEVMNQ TGTSTSSRKL FTWGDGDKNR LGHGNKETYL LPTCVSSLID YNFNQIACGH
0501: TFTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEISC GDHHVAVLTS RSEVFTWGKG SNGRLGHGDK DDRKTPTLVE ALRERHVKSI
0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYTKLK AGESGYNSNV ANRNSTTPTR
0701: SLDGTGRPDR DIRSSRILLS PKTEPVKYSE VRSSRSESSI VRASQVPALQ QLRDVAFPSS LSAIQNAFKP VASSSTSTLP SGTRSSRISS PPRSSGFSRG
0801: MIDTLKKSNG VINKEMTKLQ SQIKNLKEKC DNQGTEIQRL KKTAREASDL AVKHSSKHKA ATEVMKSVAE HLRELKEKLP PEVSRCEAFE SMNSQAEAYL
0901: NASEASESCL PTTSLGMGQR DPTPSTNTQD QNIEEKQSSN GGNMRSQEPS GTTEASSSSK GGGKELIEQF EPGVYVTYVL HKNGGKIFRR VRFSKRRFDE
1001: HQAEEWWNSK KDRLLKRYSH HASSSSPTAS DSVPTPTQPQ PPASDSVPTP TQPQPPASDS VPTPTQPQPP ASPTQPNSDQ AEDSKEVLDE S
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEVSIHDSDC FSTGRPSTAS IDFAPNNTRR GRTSIDLGIQ NSPTKFGSSD VGYERGNMLR
0201: PSTDGFRISV SSTPSCSTGT SGPDDIESLG DVYVWGEVWS DGISPDGVVN STTVKIDVLI PKPLESNVVL DVHQIACGVR HIALVTRQGE VFTWEEEAGG
0301: RLGHGIQVDV CRPKLVEFLA LTNIDFVACG EYHTCAVSTS GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT
0401: FGDGAFGVLG HGDRESVSYP KEVKMLSGLK TLKVACGVWH TVAIVEVMNQ TGTSTSSRKL FTWGDGDKNR LGHGNKETYL LPTCVSSLID YNFNQIACGH
0501: TFTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEISC GDHHVAVLTS RSEVFTWGKG SNGRLGHGDK DDRKTPTLVE ALRERHVKSI
0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYTKLK AGESGYNSNV ANRNSTTPTR
0701: SLDGTGRPDR DIRSSRILLS PKTEPVKYSE VRSSRSESSI VRASQVPALQ QLRDVAFPSS LSAIQNAFKP VASSSTSTLP SGTRSSRISS PPRSSGFSRG
0801: MIDTLKKSNG VINKEMTKLQ SQIKNLKEKC DNQGTEIQRL KKTAREASDL AVKHSSKHKA ATEVMKSVAE HLRELKEKLP PEVSRCEAFE SMNSQAEAYL
0901: NASEASESCL PTTSLGMGQR DPTPSTNTQD QNIEEKQSSN GGNMRSQEPS GTTEASSSSK GGGKELIEQF EPGVYVTYVL HKNGGKIFRR VRFSKRRFDE
1001: HQAEEWWNSK KDRLLKRYSH HASSSSPTAS DSVPTPTQPQ PPASDSVPTP TQPQPPASDS VPTPTQPQPP ASPTQPNSDQ AEDSKEVLDE S
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:F4JVE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.