CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12764	Canola	cytosol	90.26	96.37
AT4G14368.1	Thale cress	cytosol	75.51	76.4
CDY66504	Canola	cytosol	54.87	74.42
CDX85076	Canola	cytosol	66.85	72.06
CDX77534	Canola	cytosol	66.58	67.06
VIT_05s0049g01140.t01	Wine grape	cytosol	59.79	63.05
Solyc03g005590.1.1	Tomato	cytosol, plastid	55.5	57.98
PGSC0003DMT400034994	Potato	cytosol	53.26	57.58
KRH00393	Soybean	cytosol	53.71	56.22
KRH69117	Soybean	cytosol	53.26	55.29
KRH31700	Soybean	cytosol	52.55	54.55
KRH40796	Soybean	cytosol	36.28	54.13
EES19890	Sorghum	cytosol	48.61	53.33
TraesCS1A01G366800.1	Wheat	cytosol	49.6	53.16
CDY70949	Canola	cytosol	16.71	52.82
HORVU1Hr1G078890.1	Barley	cytosol	49.51	52.71
TraesCS1D01G372300.1	Wheat	cytosol	49.6	52.71
TraesCS1B01G384600.1	Wheat	cytosol	49.33	52.62
Os05t0545200-00	Rice	cytosol	47.63	52.56
Os01t0700200-01	Rice	cytosol	48.44	51.92
Zm00001d038882_P002	Maize	cytosol	48.7	51.66
Zm00001d011660_P003	Maize	cytosol	48.79	51.66
EES01332	Sorghum	cytosol	48.44	51.33
CDY11586	Canola	cytosol	46.56	49.48
CDY47138	Canola	cytosol	46.2	49.38
CDX88324	Canola	cytosol	45.67	48.16
CDX87557	Canola	cytosol	46.11	48.09
CDY48550	Canola	cytosol	40.84	46.63
CDX87986	Canola	cytosol	8.49	46.12
CDX68076	Canola	cytosol	32.71	44.1
KRH65503	Soybean	cytosol, mitochondrion, nucleus	40.21	43.02
CDX69686	Canola	nucleus	41.11	42.99
CDX85690	Canola	nucleus	40.84	42.71
CDX97187	Canola	nucleus	40.3	42.63
CDX91165	Canola	nucleus	40.75	42.5
CDX92532	Canola	nucleus	41.2	41.38
CDY13998	Canola	nucleus	41.11	41.22
CDX88891	Canola	cytosol, mitochondrion, nucleus	41.38	40.79
CDX70876	Canola	cytosol	40.21	40.36
CDX77871	Canola	cytosol	32.08	37.83
CDY21795	Canola	cytosol	32.08	37.51
CDY28580	Canola	plasma membrane	34.76	37.26
CDY44086	Canola	plasma membrane, vacuole	34.94	37.17
CDY31624	Canola	cytosol	30.12	34.28
CDX87989	Canola	cytosol	30.47	34.03
CDY69131	Canola	cytosol	9.56	33.33
CDY46423	Canola	cytosol	11.08	32.72
CDY16215	Canola	cytosol	11.17	32.38
CDY43762	Canola	cytosol	12.33	32.24
CDX84451	Canola	cytosol	12.6	31.61
CDY31347	Canola	cytosol	12.15	31.19
CDY39843	Canola	cytosol	11.26	31.19
CDX81201	Canola	cytosol	12.15	30.91
CDY60046	Canola	cytosol	12.33	30.8
CDY44785	Canola	mitochondrion	11.08	28.64
CDY40735	Canola	mitochondrion	11.08	28.38
CDX69479	Canola	cytosol	9.65	27.2
CDY34733	Canola	cytosol	8.13	27.16
CDY26488	Canola	cytosol	9.56	26.88
CDY43240	Canola	cytosol	10.99	26.06
CDX97668	Canola	cytosol	11.08	26.0
CDY56827	Canola	cytosol	11.08	26.0
CDY57523	Canola	cytosol	10.9	25.9
CDY02190	Canola	mitochondrion	10.1	25.51
CDY51633	Canola	mitochondrion	10.1	25.45
CDY39172	Canola	cytosol	10.72	24.39
CDY04192	Canola	cytosol	10.63	24.19
CDX96062	Canola	plastid	11.08	23.94
CDX99731	Canola	cytosol, plastid	11.35	23.74
CDY01845	Canola	plastid	10.9	23.6
CDY56518	Canola	cytosol, plastid	10.9	23.46
CDY28863	Canola	cytosol	10.81	23.27
CDY13609	Canola	cytosol	10.9	23.06
CDX83586	Canola	cytosol, plastid	10.9	23.06
CDY40988	Canola	cytosol, plastid	10.72	21.86
CDY14709	Canola	nucleus	11.35	18.38
CDY20113	Canola	endoplasmic reticulum, extracellular	11.08	15.03
CDY21840	Canola	endoplasmic reticulum, extracellular	11.08	15.01

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078IHE6	UniProt:A0A078IHE6
InterPro:BRX_N	InterPro:Brevis_radix_dom	EnsemblPlants:CDY49416	ProteinID:CDY49416	ProteinID:CDY49416.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00092988001	InterPro:IPR000408	InterPro:IPR001849
InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415
PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain
PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870
PANTHER:PTHR22870:SF87	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985
SUPFAM:SSF57903	UniParc:UPI0004EED674	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaCnng17260DBnaCnng17260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHE6]

Coordinates

chrLK032831:-:69797..79365

Molecular Weight (calculated)

123152.0 Da

IEP (calculated)

9.513

GRAVY (calculated)

-0.550

Length

1119 amino acids

Sequence
(BLAST)

0001: MADPSSYVNH DRDVDQALIA LKKGCQLLKY SRKGRPKFRS FRLSRDETAL LWLSHGEEKS LKLSTVSRLL PGQRTAVFRR YLRPEKDYLS FSLIYHNGDR
0101: SLDLICKDKA ETEVWFTGLK SLIRKNHNKQ ARSEVPEIHD SDIFSTGPRN NNSPIPFRDS DVASERISML RPSTDGFRIS ISSTPSCSSG GSGGPDDIES
0201: LGDVYVWGEV WSDGISSSYN GTMNSKTVRT DVLIPRPLES NVVLDVHQIA CGIRHISLVT RQGEVFTWGE EAGGRLGHGI QVDVSRPKLV EFLALTNIDF
0301: VACGEYHTCA VSTAGDLFTW GDGIHNVGLL GHGSDLSHWI PKRVSGPVEG LQVLSVACGT WHSALATANG KLFTFGDGAF GVLGHGDRES VSYPKEVKML
0401: SGLKTMKVAC GVWHTVAIVE VINQTSTSVS SRKLFTWGDG DKNRLGHGNK ETYLIPTCVS SLIDYNFHQI ACGNTLTVAL TTSGHVFTMG GTSHGQLGSS
0501: NSDGKLPCLV QDRLVGEFVE EIASGDHHVA VLTSRNEVFT WGKGSNGRLG HGDTEDRKTP TLVEALKERH VKSISCGSNF TSSICIHKWV SGADQSVCSG
0601: CRQPFGFTRK RHNCYNCGLV HCHACSSKKA LKAALAPTPG KPHRVCDACY AKLKAGGDNS NAANRYNTTP SAVRPVRETR SSRIILTPKT EPVKYSEVRS
0701: SRSESSIVRS SQVPALQQLK DVAFPSSLSA IQNAFKPNST SRRGGSPPRS SGFSRSVVDN LKKTSGKINQ EMTKLQSQVR KLKQKCDSQG IEIQRLRKTA
0801: REASELAIRH SSKHKAATEV MKSVAEHLRE LKEKLPPEVS KCEAFESMNS QAEAYLNASE AAETSQDTTL SENSQDQNIE EHPSSSNGGA MMSQEPSNTT
0901: NINPHPSDSR PPAEASSSPS KSGGKELIEQ FEPGVYVTYV LHKNGGKIFR RVRFSKRRFD EHQAEEWWNS KKDRMLKSYS HQVSSSGPMA TESVPTPTSV
1001: QPPSSPTQPN SDDQEGGKKE EREKTRKQLR ERRRGRTVSA IHTTSKAINN KKASNFFLSP FTCFKFQNWI LKNRRNKELK NRIPRNQASS FLSFTTNCGC
1101: EAVTRCILGV ELILCSLVP

Best Arabidopsis Sequence Match ( AT4G14368.2 )
(BLAST)

0001: MKTDGMADPS SYVNHDRDID QALVSLKKGT QLLKYSRKGR PKFRSFRLSP DETTLFWLSH GEEKGLKLAT VSRILPGQRT AVFRRYLRPE KDYLSFSLIY
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEIHDSDCFS TGRPSTASID FAPNNTRRGR TSIDLGIQNS PTKFGSSDVG YERGNMLRPS
0201: TDGFRISVSS TPSCSTGTSG PDDIESLGDV YVWGEVWSDG ISPDGVVNST TVKIDVLIPK PLESNVVLDV HQIACGVRHI ALVTRQGEVF TWEEEAGGRL
0301: GHGIQVDVCR PKLVEFLALT NIDFVACGEY HTCAVSTSGD LFTWGDGIHN VGLLGHGSDL SHWIPKRVSG PVEGLQVLSV ACGTWHSALA TANGKLFTFG
0401: DGAFGVLGHG DRESVSYPKE VKMLSGLKTL KVACGVWHTV AIVEVMNQTG TSTSSRKLFT WGDGDKNRLG HGNKETYLLP TCVSSLIDYN FNQIACGHTF
0501: TVALTTSGHV FTMGGTSHGQ LGSSNSDGKL PCLVQDRLVG EFVEEISCGD HHVAVLTSRS EVFTWGKGSN GRLGHGDKDD RKTPTLVEAL RERHVKSISC
0601: GSNFTSSICI HKWVSGADQS VCSGCRQAFG FTRKRHNCYN CGLVHCHACS SKKALKAALA PTPGKPHRVC DACYTKLKAG ESGYNSNVAN RNSTTPTRSL
0701: DGTGRPDRDI RSSRILLSPK TEPVKYSEVR SSRSESSIVR ASQVPALQQL RDVAFPSSLS AIQNAFKPVA SSSTSTLPSG TRSSRISSPP RSSGFSRGMI
0801: DTLKKSNGVI NKEMTKLQSQ IKNLKEKCDN QGTEIQRLKK TAREASDLAV KHSSKHKAAT EVMKSVAEHL RELKEKLPPE VSRCEAFESM NSQAEAYLNA
0901: SEASESCLPT TSLGMGQRDP TPSTNTQDQN IEEKQSSNGG NMRSQEPSGT TEASSSSKGG GKELIEQFEP GVYVTYVLHK NGGKIFRRVR FSKRRFDEHQ
1001: AEEWWNSKKD RLLKRYSHHA SSSSPTASDS VPTPTQPQPP ASDSVPTPTQ PQPPASDSVP TPTQPQPPAS PTQPNSDQAE DSKEVLDES

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:F4JVE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.