Factsheet for Zm00001d038882_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19890	Sorghum	cytosol	88.72	91.76
Os05t0545200-00	Rice	cytosol	72.7	75.64
TraesCS1A01G366800.1	Wheat	cytosol	73.84	74.62
TraesCS1D01G372300.1	Wheat	cytosol	73.84	73.98
TraesCS1B01G384600.1	Wheat	cytosol	73.46	73.88
HORVU1Hr1G078890.1	Barley	cytosol	73.55	73.83
Zm00001d011660_P003	Maize	cytosol	67.68	67.55
CDY66504	Canola	cytosol	45.88	58.67
VIT_05s0049g01140.t01	Wine grape	cytosol	54.98	54.67
PGSC0003DMT400034994	Potato	cytosol	51.47	52.46
Solyc03g005590.1.1	Tomato	cytosol, plastid	52.89	52.1
CDY12764	Canola	cytosol	51.75	52.1
CDX85076	Canola	cytosol	50.52	51.35
KRH00393	Soybean	cytosol	51.47	50.8
AT3G23270.2	Thale cress	cytosol	50.52	50.57
KRH31700	Soybean	cytosol	51.37	50.28
Bra023740.1-P	Field mustard	cytosol	50.62	50.09
KRH69117	Soybean	cytosol	51.0	49.91
KRH40796	Soybean	cytosol	35.07	49.33
CDY49416	Canola	cytosol	51.66	48.7
AT4G14368.1	Thale cress	cytosol	50.71	48.37
CDX77534	Canola	cytosol	50.33	47.79
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	39.43	45.37
Zm00001d011805_P001	Maize	cytosol	39.15	45.29
Zm00001d002876_P001	Maize	mitochondrion	45.59	44.25
Zm00001d006773_P001	Maize	cytosol	16.3	42.68
Zm00001d042074_P001	Maize	cytosol	43.32	41.89
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	48.63	40.39
KRH65503	Soybean	cytosol, mitochondrion, nucleus	39.91	40.25
Zm00001d011851_P001	Maize	cytosol	42.56	40.16
Zm00001d017641_P004	Maize	cytosol	30.05	36.82
Zm00001d051479_P005	Maize	nucleus	32.04	31.41
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	32.51	30.9
Zm00001d003632_P003	Maize	extracellular	12.61	30.02
Zm00001d050380_P004	Maize	cytosol	10.05	27.25
Zm00001d021372_P001	Maize	mitochondrion	10.9	26.62
Zm00001d032229_P002	Maize	mitochondrion	10.43	26.25
Zm00001d043280_P001	Maize	cytosol	10.14	26.23
Zm00001d019595_P001	Maize	cytosol	11.94	26.09
Zm00001d005395_P001	Maize	cytosol	11.85	25.88
Zm00001d033172_P001	Maize	cytosol	11.37	25.0
Zm00001d052624_P007	Maize	plastid	10.43	24.02
Zm00001d050985_P002	Maize	cytosol	12.04	22.84

Protein Annotations

EntrezGene:103630677	Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6MBL1
ProteinID:AQK88161.1	InterPro:BRX_N	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591
InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	InterPro:PH-like_dom_sf
PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870
PANTHER:PTHR22870:SF238	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985
SUPFAM:SSF57903	UniParc:UPI000843415E	EnsemblPlantsGene:Zm00001d038882	EnsemblPlants:Zm00001d038882_P002	EnsemblPlants:Zm00001d038882_T002	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Putative regulator of chromosome condensation (RCC1) family protein

Coordinates

chr6:-:166324613..166330458

Molecular Weight (calculated)

114883.0 Da

IEP (calculated)

8.852

GRAVY (calculated)

-0.386

Length

1055 amino acids

Sequence
(BLAST)

0001: MQINASFHPN RAPRPSLVVL VPPRLAWSED PSGLRLISSP AGPNVHLYAQ LQALIALKKG SKLIKYSRKG RPKIREFRLS SDETSLVWYS HSKVKYLVLS
0101: SVSRIIPGQR TAVFRRFLRP EKDYLSFSLI YKNGQRSLDL VCKDQAEVEV WFSTLEALIT SCRKSYSADG PSDRLSVSDE VSHYQDTFHD TTLDIASSIT
0201: RTFNSAKTDV VSDRANMLRA STDSSRLSIS SAPSSSSQGS GQDDIESLGD VYVWGEVWTD MIPAEGSANY LCSKADILIP KPLESDVVLD VQQIACGYRH
0301: IALTTRQGEV FAWGEELGGR LGHGTDADIS RPKLVEALAV SNVEYVACGE FHTCAITASG DLYTWGDGYY NAGLLGHGAG TSHWLPKRVS GPLEGVQVLS
0401: VSCGSWHSAL TTSSGKVFTF GDGTFGALGH GNRHTVAYPK EVETLSGFRT IKVACGLWHS AAIVETTNQA GVNVISRKLF TWGAGDKNPL GHGDKDARLV
0501: PTCVQSLIDY NFHQVACGHS MTIALSTSGH VFTMGSSSNG QLGNPKSDGK HPTPVQDRLA GELVEEISCG SCHVAVLTSR SEVYTWGMGA NGRLGHGGVE
0601: DKKKPTLVEA LKDRHVKSIA CGSNFTTCIC IHKWVSGADQ SVCSGCRQPF GFTRKRHNCY NCGLVHCHAC SSKKVLKAAL APTPGKPHRV CDSCFMKLKA
0701: AETSSNSSHS KRNAIARRSV DSKDRSERPE IRSSRLATGS TAEPLKQAEL KAVRNEIKPD PMSTMRAPQV PSMLPFNNLA FGATFGGPAS LKPMTMAPMP
0801: MAMPMSPAPL TKKPTPAAAT PLCGKSDTDN LKMAKQVLNE DISKLQSQVN KLKQKCDAQE EQLQKAERRA EHSASTAAEE SSRRNGVLEF IRFLDNELKS
0901: IADRVPSDAA DGLKALQNHS ERFLTEQGVR PLEATGMHRK CASIGNLVMS QDGSAGNASS SAASLASESP CHRIMENSSR ANGDLAPKLG GTHGEVQLIE
1001: QFEPGVYVTL IQLRDGTKVF KRVRFSKRRF AEQQAEEWWR ENQERVFRKY NHPAN

Best Arabidopsis Sequence Match ( AT4G14368.4 )
(BLAST)

0001: MKTDGMADPS SYVNHDRDID QALVSLKKGT QLLKYSRKGR PKFRSFRLSP DETTLFWLSH GEEKGLKLAT VSRILPGQRT AVFRRYLRPE KDYLSFSLIY
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEVSIHDSDC FSTGRPSTAS IDFAPNNTRR GRTSIDLGIQ NSPTKFGSSD VGYERGNMLR
0201: PSTDGFRISV SSTPSCSTGT SGPDDIESLG DVYVWGEVWS DGISPDGVVN STTVKIDVLI PKPLESNVVL DVHQIACGVR HIALVTRQGE VFTWEEEAGG
0301: RLGHGIQVDV CRPKLVEFLA LTNIDFVACG EYHTCAVSTS GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT
0401: FGDGAFGVLG HGDRESVSYP KEVKMLSGLK TLKVACGVWH TVAIVEVMNQ TGTSTSSRKL FTWGDGDKNR LGHGNKETYL LPTCVSSLID YNFNQIACGH
0501: TFTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEISC GDHHVAVLTS RSEVFTWGKG SNGRLGHGDK DDRKTPTLVE ALRERHVKSI
0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYTKLK AGESGYNSNV ANRNSTTPTR
0701: SLDGTGRPDR DIRSSRILLS PKTEPVKYSE VRSSRSESSI VRASQVPALQ QLRDVAFPSS LSAIQNAFKP VASSSTSTLP SGTRSSRISS PPRSSGFSRG
0801: MIDTLKKSNG VINKEMTKLQ SQIKNLKEKC DNQGTEIQRL KKTAREASDL AVKHSSKHKA ATEVMKSVAE HLRELKEKLP PEVSRCEAFE SMNSQAEAYL
0901: NASEASESCL PTTSLGMGQR DPTPSTNTQD QNIEEKQSSN GGNMRSQEPS GTTEASSSSK GGGKELIEQF EPGVYVTYVL HKNGGKIFRR VRFSKRRFDE
1001: HQAEEWWNSK KDRLLKRYSH HASSSSPTAS DSVPTPTQPQ PPASDSVPTP TQPQPPASDS VPTPTQPQPP ASPTQPNSDQ AEDSKEVLDE S

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:F4JVE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.