Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU87663 | Sorghum | cytosol | 88.97 | 89.85 |
| TraesCS3B01G347100.2 | Wheat | cytosol | 74.26 | 74.45 |
| Os01t0777800-01 | Rice | cytosol | 73.04 | 74.31 |
| TraesCS3D01G312300.1 | Wheat | cytosol | 73.53 | 73.71 |
| TraesCS3A01G319000.1 | Wheat | cytosol | 74.02 | 73.66 |
| HORVU3Hr1G076310.2 | Barley | cytosol, mitochondrion, nucleus | 72.55 | 65.2 |
| GSMUA_Achr6P29750_001 | Banana | cytosol | 54.9 | 56.42 |
| VIT_01s0026g01520.t01 | Wine grape | cytosol | 48.77 | 50.25 |
| CDY46423 | Canola | cytosol | 45.59 | 49.08 |
| CDY16215 | Canola | cytosol | 46.32 | 48.96 |
| Bra016304.1-P | Field mustard | cytosol | 44.12 | 48.78 |
| AT1G27060.1 | Thale cress | cytosol | 46.08 | 48.7 |
| Solyc05g006940.2.1 | Tomato | cytosol | 46.81 | 48.48 |
| PGSC0003DMT400045467 | Potato | cytosol | 47.06 | 48.36 |
| CDY69131 | Canola | cytosol | 37.99 | 48.29 |
| Bra024664.1-P | Field mustard | cytosol | 42.16 | 47.91 |
| KRH74759 | Soybean | nucleus | 45.34 | 32.86 |
| KRH69375 | Soybean | nucleus | 45.34 | 31.3 |
| CDY14709 | Canola | nucleus | 45.59 | 26.92 |
| Zm00001d050380_P004 | Maize | cytosol | 23.77 | 24.94 |
| Zm00001d032229_P002 | Maize | mitochondrion | 23.53 | 22.91 |
| Zm00001d052624_P007 | Maize | plastid | 23.77 | 21.18 |
| Zm00001d003632_P003 | Maize | extracellular | 21.32 | 19.64 |
| Zm00001d019595_P001 | Maize | cytosol | 23.04 | 19.46 |
| Zm00001d021372_P001 | Maize | mitochondrion | 20.59 | 19.44 |
| Zm00001d005395_P001 | Maize | cytosol | 22.79 | 19.25 |
| Zm00001d033172_P001 | Maize | cytosol | 21.08 | 17.92 |
| Zm00001d050985_P002 | Maize | cytosol | 18.14 | 13.31 |
| Zm00001d011805_P001 | Maize | cytosol | 26.47 | 11.84 |
| Zm00001d035723_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 25.98 | 11.56 |
| Zm00001d017641_P004 | Maize | cytosol | 22.06 | 10.45 |
| Zm00001d011660_P003 | Maize | cytosol | 26.72 | 10.31 |
| Zm00001d042074_P001 | Maize | cytosol | 27.45 | 10.27 |
| Zm00001d011851_P001 | Maize | cytosol | 27.94 | 10.2 |
| Zm00001d038882_P002 | Maize | cytosol | 26.23 | 10.14 |
| Zm00001d002876_P001 | Maize | mitochondrion | 25.98 | 9.75 |
| Zm00001d006773_P001 | Maize | cytosol | 9.56 | 9.68 |
| Zm00001d051479_P005 | Maize | nucleus | 23.53 | 8.92 |
| Zm00001d002544_P004 | Maize | cytosol, endoplasmic reticulum, nucleus | 23.77 | 8.74 |
Protein Annotations
| EMBL:BT064987 | EnsemblPlants:Zm00001d043280_P001 | EnsemblPlants:Zm00001d043280_T001 | EnsemblPlantsGene:Zm00001d043280 | EntrezGene:100191830 | Gene3D:2.130.10.30 |
| InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF303 |
| PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 | ProteinID:ONM37397.1 | ScanProsite:PS00626 | SEG:seg |
| SUPFAM:SSF50985 | UniParc:UPI000194B1A3 | UniProt:C0P9L8 | MapMan:35.1 | : | : |
Description
Regulator of chromosome condensation (RCC1) family protein
Coordinates
chr3:+:194286937..194296506
Molecular Weight (calculated)
43746.1 Da
IEP (calculated)
5.955
GRAVY (calculated)
-0.237
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEAMAVAAL DEIWWREPEE EAPVEWTWSW GAGTDGQLGN GGFDDHHLPQ PLLLPTRCRS RVSFVAGGGA HAIALTSDGE VFTWGRGTHG QLGHGNLDNM
101: PHPKLVKFLE NHTVTCVSAG WNHSGFATDS GQLFMCGDGS FGQLGTGDNL SRNFPFEVAY FNATHIEKLA FGMRHSLVLL KDNSVYGFGS ARRGQVGKCA
201: SRIQKSYNVP RLIDGFPNCK IVNIYANGDH SAALDESGHL YVWGRALIGQ HDDDQPSEIL PSLSVSQVAL GWHHALVLSA GELYTLGVYR HQKCDLPGLG
301: NVLGQQSDTR ATSSSHDCSS SLSVLETVPF LDGEQVAQIA SGTEHSALVT DKGTVFTWGW GEHGQLGLGD TSDHVAPQRV NVGDNGQGMS GSFAVYCGSG
401: FTVAVKSP
101: PHPKLVKFLE NHTVTCVSAG WNHSGFATDS GQLFMCGDGS FGQLGTGDNL SRNFPFEVAY FNATHIEKLA FGMRHSLVLL KDNSVYGFGS ARRGQVGKCA
201: SRIQKSYNVP RLIDGFPNCK IVNIYANGDH SAALDESGHL YVWGRALIGQ HDDDQPSEIL PSLSVSQVAL GWHHALVLSA GELYTLGVYR HQKCDLPGLG
301: NVLGQQSDTR ATSSSHDCSS SLSVLETVPF LDGEQVAQIA SGTEHSALVT DKGTVFTWGW GEHGQLGLGD TSDHVAPQRV NVGDNGQGMS GSFAVYCGSG
401: FTVAVKSP
001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS
Arabidopsis Description
At1g27060 [Source:UniProtKB/TrEMBL;Acc:A2RVN2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.