Factsheet for Zm00001d003632_P003

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018207_P001
Zm00001d052138_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63860.1	Zm00001d018207_P001	AT2G32950.1	19165148
AT5G63860.1	Zm00001d052138_P004	AT2G32950.1	19165148

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10837	Sorghum	cytosol	97.29	97.29
Os04t0435700-01	Rice	plasma membrane	90.07	88.08
HORVU2Hr1G076180.1	Barley	cytosol, endoplasmic reticulum	86.0	86.39
TraesCS2B01G323100.1	Wheat	unclear	85.78	85.97
TraesCS2D01G304900.2	Wheat	cytosol	85.55	85.55
TraesCS2A01G306400.3	Wheat	cytosol	85.55	85.55
GSMUA_Achr6P17690_001	Banana	cytosol	76.3	76.99
GSMUA_Achr3P19000_001	Banana	nucleus	77.88	76.84
VIT_07s0031g02560.t01	Wine grape	cytosol	74.49	74.16
Solyc05g018620.2.1	Tomato	cytosol	51.24	73.94
Bra029198.1-P	Field mustard	cytosol	68.4	73.54
CDY31347	Canola	cytosol	72.01	73.17
Bra024242.1-P	Field mustard	cytosol	67.72	72.99
CDY43762	Canola	cytosol	70.43	72.9
Bra037755.1-P	Field mustard	cytosol	68.4	72.84
AT5G63860.1	Thale cress	cytosol	72.23	72.73
CDX81201	Canola	cytosol	71.56	72.05
CDY60046	Canola	cytosol	72.23	71.43
CDY39843	Canola	cytosol	64.79	71.04
CDX84451	Canola	cytosol	71.11	70.63
KRH59606	Soybean	cytosol	66.82	67.73
KRH53944	Soybean	plastid	69.07	64.56
KRH63996	Soybean	nucleus	69.07	63.49
KRH40960	Soybean	cytosol	46.05	60.35
Zm00001d050380_P004	Maize	cytosol	24.61	28.02
Zm00001d032229_P002	Maize	mitochondrion	24.38	25.78
Zm00001d019595_P001	Maize	cytosol	26.41	24.22
Zm00001d005395_P001	Maize	cytosol	25.96	23.81
Zm00001d021372_P001	Maize	mitochondrion	22.35	22.92
Zm00001d033172_P001	Maize	cytosol	24.38	22.5
Zm00001d043280_P001	Maize	cytosol	19.64	21.32
Zm00001d052624_P007	Maize	plastid	20.77	20.09
Zm00001d050985_P002	Maize	cytosol	23.25	18.53
Zm00001d011805_P001	Maize	cytosol	32.05	15.57
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	31.15	15.05
Zm00001d042074_P001	Maize	cytosol	36.34	14.76
Zm00001d017641_P004	Maize	cytosol	28.67	14.75
Zm00001d011851_P001	Maize	cytosol	36.79	14.58
Zm00001d002876_P001	Maize	mitochondrion	32.96	13.43
Zm00001d006773_P001	Maize	cytosol	11.74	12.9
Zm00001d051479_P005	Maize	nucleus	31.15	12.83
Zm00001d038882_P002	Maize	cytosol	30.02	12.61
Zm00001d011660_P003	Maize	cytosol	30.02	12.58
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	30.7	12.25

Protein Annotations

EntrezGene:100273233	Gene3D:2.130.10.30	MapMan:26.1.3.1	UniProt:B4FTT2	EMBL:BT040520	EMBL:BT067342
GO:GO:0000785	GO:GO:0003674	GO:GO:0003682	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009411	GO:GO:0009605	GO:GO:0009628
GO:GO:0009649	GO:GO:0009881	GO:GO:0009987	GO:GO:0010224	GO:GO:0038023	GO:GO:0042802
GO:GO:0042803	InterPro:IPR000408	InterPro:IPR009091	ProteinID:ONM17310.1	PFAM:PF00415	PRINTS:PR00633
ScanProsite:PS00626	PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF317	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens
SUPFAM:SSF50985	UniParc:UPI00017B7BC4	InterPro:UVR8	EnsemblPlantsGene:Zm00001d003632	EnsemblPlants:Zm00001d003632_P003	EnsemblPlants:Zm00001d003632_T003

Description

regulator of chromosome condensation2 regulator of chromosome condensation2

Coordinates

chr2:-:51106489..51111751

Molecular Weight (calculated)

47161.0 Da

IEP (calculated)

5.399

GRAVY (calculated)

-0.346

Length

443 amino acids

Sequence
(BLAST)

001: MDSVMAAPDS PPQTVVLVSA GASHSVALLT GNVLCSWGRG EDGQLGHGDA EDRLVPTVLS GFDAPAITSV ICGADHTTAY SEDELQVYSW GWGDFGRLGH
101: GNSSDVFTPQ PVKALQGLKI KQIACGDSHC LAVTMAGEVQ SWGRNQNGQL GLGTTEDSLL PQKIQAFESV CVKMIAAGAE HTAAVTEDGD LYGWGWGRYG
201: NLGLGDRNDR LLPEKVSSVE GEKMVLVACG WRHTITVSDS GNLYTYGWSK YGQLGHGDFE DHLVPHKVEA LKDSTISQIS GGWRHTMALT SEGKLYGWGW
301: NKFGQVGVGN NDDHSSPGQV SFPEDQKISQ VACGWRHTLA LSEKKNVFSW GRGTSGQLGN GEIVDRNTPV LIDALSSDGS ACKKLESSTA APFAAKVWVS
401: PSERYAIVPD ENVRKAGGGT ARGNGADANV PENDVKRMRV QSS

Best Arabidopsis Sequence Match ( AT5G63860.1 )
(BLAST)

001: MAEDMAADEV TAPPRKVLII SAGASHSVAL LSGDIVCSWG RGEDGQLGHG DAEDRPSPTQ LSALDGHQIV SVTCGADHTV AYSQSGMEVY SWGWGDFGRL
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI

Arabidopsis Description

UVR8Ultraviolet-B receptor UVR8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.