Factsheet for Zm00001d002544_P004

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

mitochondrion 2
endoplasmic reticulum 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26989	Sorghum	cytosol	87.21	90.72
TraesCS2D01G457000.1	Wheat	cytosol, nucleus, peroxisome	62.43	67.74
TraesCS2B01G478900.1	Wheat	cytosol, nucleus, peroxisome	62.52	67.31
TraesCS2A01G456700.1	Wheat	cytosol, nucleus, peroxisome	62.43	65.87
Os04t0583700-00	Rice	cytosol	60.18	64.6
HORVU2Hr1G104550.10	Barley	cytosol, nucleus, plastid	62.52	60.09
Zm00001d017641_P004	Maize	cytosol	45.59	58.77
Zm00001d051479_P005	Maize	nucleus	52.25	53.9
GSMUA_Achr1P02140_001	Banana	cytosol	40.45	50.28
GSMUA_Achr5P11650_001	Banana	cytosol	41.26	47.22
CDX87986	Canola	cytosol	8.29	44.66
Solyc02g036390.1.1	Tomato	cytosol	30.45	43.06
AT1G65920.1	Thale cress	cytosol	37.48	41.35
CDY31624	Canola	cytosol	36.13	40.79
KRH30884	Soybean	cytosol	39.1	40.41
KRG98005	Soybean	cytosol	38.92	40.37
Bra038181.1-P	Field mustard	cytosol	36.31	40.22
CDX87989	Canola	cytosol	36.04	39.92
PGSC0003DMT400043094	Potato	nucleus	38.11	39.31
VIT_04s0079g00290.t01	Wine grape	cytosol	35.41	39.1
Zm00001d042074_P001	Maize	cytosol	34.95	35.56
Zm00001d011851_P001	Maize	cytosol	34.68	34.44
Zm00001d011660_P003	Maize	cytosol	31.26	32.83
Zm00001d011805_P001	Maize	cytosol	26.94	32.79
Zm00001d002876_P001	Maize	mitochondrion	32.07	32.75
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	27.03	32.72
Zm00001d038882_P002	Maize	cytosol	30.9	32.51
Zm00001d003632_P003	Maize	extracellular	12.25	30.7
Zm00001d006773_P001	Maize	cytosol	11.08	30.52
Zm00001d021372_P001	Maize	mitochondrion	10.36	26.62
Zm00001d005395_P001	Maize	cytosol	10.63	24.43
Zm00001d019595_P001	Maize	cytosol	10.63	24.43
Zm00001d043280_P001	Maize	cytosol	8.74	23.77
Zm00001d033172_P001	Maize	cytosol	10.18	23.54
Zm00001d050380_P004	Maize	cytosol	8.2	23.39
Zm00001d052624_P007	Maize	plastid	9.46	22.93
Zm00001d032229_P002	Maize	mitochondrion	8.47	22.43
Solyc02g081250.1.1	Tomato	cytosol	38.02	20.22
Zm00001d050985_P002	Maize	cytosol	10.0	19.96

Protein Annotations

EntrezGene:103646027	Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6E1T8
InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408
InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455
ProteinID:ONM14631.1	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF16457	InterPro:PH-like_dom_sf
InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514
PANTHER:PTHR22870	PANTHER:PTHR22870:SF177	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729
SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI00084307BA	EnsemblPlantsGene:Zm00001d002544	EnsemblPlants:Zm00001d002544_P004	EnsemblPlants:Zm00001d002544_T004
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain

Coordinates

chr2:+:15091610..15099493

Molecular Weight (calculated)

122779.0 Da

IEP (calculated)

9.005

GRAVY (calculated)

-0.428

Length

1110 amino acids

Sequence
(BLAST)

0001: MAGSFDLRTP TRGVEQSIGM HLLIASARCF VQAIVALKKG AHLLKCGKRG KPKFCAFRIS SDETTLIWYS KGREKHLSLS SVSAVVLGQK TIKFLRQRCP
0101: EKEPHSFSLI YKNGERSLDL ICSDRDQAEN WYLGLRALLP TPCNPCSSIE SRSSRQIDSC TNTPSSYIQL KSKLLSVHGT PRHIQFNLVH ILLFGSNNSS
0201: NALHVKVCSS QRKPKKAHGT FFGGSADCSE SLFYTRQRTF SDIGTYLENL TRKMSNPEIH DLKDVMVGNQ EKEQKITQTP KLKTFEGPRA ACRLDSLKDV
0301: FFWGDAFGSI LECGDTSKPL PMLVDSTNML DVQSIACGET HAAIITKQGE VYSWGNESSG RIGNQVNIKV SRPKVVQSLA SLHVKDVAYG SKHTCAVTVS
0401: GELIEWGEGP YMGQLDSYAR NQWFPHKLFS PLDGISVVKI ACGPWHTAII TSSGQLYTYG DGTFGVLGHG DTQGTTRPKE VESLKGSRVK CVACGPWHTA
0501: AIVEVISDFK SNSPRSKLFT WGDADRGKLG HADKKMKLIP TCVDSLTDYD FIQVSCGTAL TVALSVTGVV FTSGSSMHGQ LGNPHADGKT VSAVEGLLKS
0601: EFVRHISSGS SHVAVVTTNG KVFTWGKGKE GQLGLGDFLN RSTPTLVDAL EGRHVESLSC GYNYTAAVCL HKVISRKDLS VCSGCKMAFG FTRKKHNCYH
0701: CGSMFCNSCS SNKVAKAALA PDKSRRYRVC DGCFSQLLKV VDSGKVKSEL NTSKGAEIIR SYTPKLSRIF RDVNLPVEKE KVALVQRSNQ RNEVLYTPVQ
0801: AKSQRWGQVE CPAQFLSAED SSHYQSISKN HMYSASVSER MHDPTVLKSG RSLQQPNDDQ RKDLNSIEET LLTEEVKQLR SQMTLLMEQY HQKALQVELY
0901: KQKLDETWLI VRNEAAKCKA AKDIIKVLTD QCKALSEKLL VGQQYENLET KSNISQGQTF SADLQHHPSE KFATGKFGQL DNTKNHQTSS QGDEEYTPSS
1001: SSDVQVEGLC GHLNGSRTFD SNGRITEGNS IVARVTSNGV IEQIERGVYV TFAVSPCGKK DIKRVRFSRK HFGEKEAQHW WEENKGSVYA KYSTEKAQHQ
1101: LEVTIKSVQE

Best Arabidopsis Sequence Match ( AT1G65920.1 )
(BLAST)

0001: MGEQQISVTV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CPFKLSMDEK YLIWYSGEEE RQLRLSSVIT IVRGQITPNF QKQAQSDRKE QSFSLIYANG
0101: EHTLDLICKD KAQADSWFKG LRAVITKHHN IRNSVNHRSS RGAQSCINSP AGFMRRKQNL GLLEETPDVT QIRSLCGSPS TLLEERCLSN GLSCSSDSFA
0201: ESDALGPVSS YYETDYDFRN SDCDRSTGSE LCRFSSQRFA ASPPLSIITQ PVTRSNVLKD IMIWGAITGL IDGSKNQNDA LSPKLLESAT MFDVQSISLG
0301: AKHAALVTRQ GEVFCWGNGN SGKLGLKVNI DIDHPKRVES LEDVAVRSVA CSDHQTCAVT ESGELYLWGI DGGTIEQSGS QFLTRKISDV LGGSLTVLSV
0401: ACGAWHTAIV TSSGQLFTYG SGTFGVLGHG SLESVTKPKE VESLRRMKVI SVSCGPWHTA AIVETANDRK FYNAKSCGKL FTWGDGDKGR LGHADSKRKL
0501: VPTCVTELID HDFIKVSCGW TLTVALSISG TVYTMGSSIH GQLGCPRAKD KSVNVVLGNL TRQFVKDIAS GSHHVAVLTS FGNVYTWGKG MNGQLGLGDV
0601: RDRNSPVLVE PLGDRLVESI ACGLNLTAAI CLHKEISLND QTACSSCKSA FGFTRRKHNC YNCGLLFCNA CSSKKAVNAS LAPNKSKLSR VCDSCFDHLW
0701: SITEFSRNVK MDNHTPRMQM VTRRVSEDLT EKQSENEMQN LPQANRSSDG QPRWGQVSGP SLFRFDKIST SSSLNLSVSA RRTSSTKIST SSESNKILTE
0801: EIERLKAVIK NLQRQCELGN EKMEECQQEL DKTWEVAKEE AEKSKAAKEI IKALASKLQA NKEKPSNPLK TGIACNPSQV SPIFDDSMSI PYLTPITTAR
0901: SQHETKQHVE KCVTKSSNRD SNIKLLVDAS PAITRTGYLQ NETQDSSAEQ VEQYEPGVYI TFTALPCGQK TLKRVRFSRK RFSEKEAQRW WEEKQVLVYN
1001: KYDAEI

Arabidopsis Description

F12P19.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.