Factsheet for Zm00001d052624_P007

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09892	Sorghum	mitochondrion	81.66	89.47
Os11t0545800-01	Rice	mitochondrion	73.36	79.06
HORVU1Hr1G016430.4	Barley	cytosol	67.03	77.33
TraesCS1D01G078800.1	Wheat	mitochondrion	69.21	75.66
TraesCS1A01G076400.1	Wheat	mitochondrion	69.21	75.66
GSMUA_Achr10P...	Banana	mitochondrion	55.02	60.0
Solyc05g056590.2.1	Tomato	cytosol	31.66	52.73
VIT_07s0031g02850.t01	Wine grape	mitochondrion	47.16	51.43
KRH63955	Soybean	mitochondrion	46.72	51.32
CDY44785	Canola	mitochondrion	48.47	51.27
Bra028647.1-P	Field mustard	mitochondrion	48.47	50.8
CDY40735	Canola	mitochondrion	48.47	50.8
KRH53977	Soybean	cytosol, mitochondrion, nucleus	34.93	50.0
AT5G08710.1	Thale cress	mitochondrion	47.38	50.0
Zm00001d043280_P001	Maize	cytosol	21.18	23.77
Zm00001d050380_P004	Maize	cytosol	19.87	23.39
Zm00001d032229_P002	Maize	mitochondrion	19.87	21.72
Zm00001d003632_P003	Maize	extracellular	20.09	20.77
Zm00001d033172_P001	Maize	cytosol	21.18	20.21
Zm00001d021372_P001	Maize	mitochondrion	16.16	17.13
Zm00001d005395_P001	Maize	cytosol	17.69	16.77
Zm00001d019595_P001	Maize	cytosol	17.69	16.77
Zm00001d050985_P002	Maize	cytosol	19.0	15.65
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	23.36	11.67
Zm00001d011805_P001	Maize	cytosol	22.49	11.29
Zm00001d017641_P004	Maize	cytosol	20.96	11.15
Zm00001d042074_P001	Maize	cytosol	25.55	10.72
Zm00001d038882_P002	Maize	cytosol	24.02	10.43
Zm00001d006773_P001	Maize	cytosol	9.17	10.42
Zm00001d011660_P003	Maize	cytosol	24.02	10.41
Zm00001d011851_P001	Maize	cytosol	25.33	10.38
Zm00001d051479_P005	Maize	nucleus	23.14	9.85
Zm00001d002876_P001	Maize	mitochondrion	22.71	9.57
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	22.93	9.46

Protein Annotations

EnsemblPlants:Zm00001d052624_P007	EnsemblPlants:Zm00001d052624_T007	EnsemblPlantsGene:Zm00001d052624	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF245	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ProteinID:AQK57539.1	ScanProsite:PS00626	SUPFAM:SSF50985	UniParc:UPI0008437556	UniProt:A0A1D6QI46
MapMan:35.1	:	:	:	:	:

Description

Regulator of chromosome condensation (RCC1) family protein

Coordinates

chr4:-:195157760..195163992

Molecular Weight (calculated)

48881.9 Da

IEP (calculated)

6.339

GRAVY (calculated)

-0.073

Length

458 amino acids

Sequence
(BLAST)

001: MRVFAPPTRP IAILPASEPV SSPCCPRGLA VAASSTFLSS APSAMWRATR RSPPFLRWLS SDAASSKAPR QRVAALWGNG DYGRLGLGSL ESRWSPTVCP
101: FFLARAADPP ASLACGGAHT LFLTQNGRVF ATGLNDFGQL GIGTSVTHML EPVEISGFHE RVVEVSAGNH HSCAVTGAGK VVSTPTKVDC LTDLRVKTVA
201: LGSEHSIAVT EEGEVLSWGA AGSGRLGHGR QSSILGFSLT STEYTPRLIK NFDGIKIKKI AAGMLHSACI DEKGTLFIFG QKTEKVGFGR PNEEFRPNIV
301: EEIPFSEEVA CGGYHTCVVT DSGDLYSWGS NENGCLGLGG TDMVRSPEIL KSSLFKLPVS KVSCGWKHTA VVSGDDIYTW GWGGANGTFF EEGHSSGGQL
401: DTIHMDMVEL TCYLQGHGND VDYFEPMMVP FGTNARAVHV SCGFNHTGAI YECSEDFD

Best Arabidopsis Sequence Match ( AT5G08710.1 )
(BLAST)

001: MLTRAIGRVR IPVSRIQGSN CTSGLLKDSK LGPIGVCCSR WVSSESGKRF AAMWGSGDYG RLGLGNLDSQ WTPAVCSALS DHSITAVACG GAHTLFLTET
101: RRVFATGLND CGQLGVSDVK SHAMDPLEVS GLDKDILHIS AGYYHSAAIT VDGELYMWGK NSSGQLGLGK KAARVVRVPT KVEALHGITI QSVALGSEHS
201: VAVTDGGEVL SWGGGGSGRL GHGHQSSLFG ILRSNSEFTP RLIKELEGIK VTNVAAGLLH SACTDENGSA FMFGEKSINK MGFGGVRNAT TPSIISEVPY
301: AEEVACGGYH TCVVTRGGEL YTWGSNENGC LGTDSTYVSH SPVRVEGPFL ESTVSQVSCG WKHTAAISDN NVFTWGWGGS HGTFSVDGHS SGGQLGHGSD
401: VDYARPAMVD LGKNVRAVHI SCGFNHTAAV LEHF

Arabidopsis Description

RUG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.