Factsheet for VIT_07s0031g02850.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63955	Soybean	mitochondrion	69.29	69.78
KRH53977	Soybean	cytosol, mitochondrion, nucleus	51.19	67.19
AT5G08710.1	Thale cress	mitochondrion	66.9	64.75
Solyc05g056590.2.1	Tomato	cytosol	41.9	64.0
CDY44785	Canola	mitochondrion	65.24	63.28
Bra028647.1-P	Field mustard	mitochondrion	65.71	63.16
CDY40735	Canola	mitochondrion	65.71	63.16
GSMUA_Achr10P...	Banana	mitochondrion	60.95	60.95
HORVU1Hr1G016430.4	Barley	cytosol	55.71	58.94
EES09892	Sorghum	mitochondrion	57.38	57.66
TraesCS1D01G078800.1	Wheat	mitochondrion	56.43	56.56
TraesCS1A01G076400.1	Wheat	mitochondrion	56.19	56.32
Os11t0545800-01	Rice	mitochondrion	56.43	55.76
Zm00001d052624_P007	Maize	plastid	51.43	47.16
VIT_12s0057g00540.t01	Wine grape	cytosol, mitochondrion	12.14	27.42
VIT_07s0031g02560.t01	Wine grape	cytosol	28.1	26.52
VIT_01s0026g01520.t01	Wine grape	cytosol	24.05	25.51
VIT_14s0006g03240.t01	Wine grape	cytosol	23.33	24.81
VIT_14s0083g01020.t01	Wine grape	cytosol	22.86	20.08
VIT_19s0014g03080.t01	Wine grape	cytosol	21.9	18.7
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	14.52	18.54
VIT_01s0137g00230.t01	Wine grape	cytosol	22.38	17.6
VIT_01s0026g02170.t01	Wine grape	cytosol	30.71	14.21
VIT_17s0000g05980.t01	Wine grape	endoplasmic reticulum	21.9	13.31
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	30.95	11.84
VIT_06s0009g03550.t01	Wine grape	nucleus	30.95	11.74
VIT_05s0049g01140.t01	Wine grape	cytosol	29.52	11.69
VIT_04s0079g00290.t01	Wine grape	cytosol	24.52	10.25
VIT_18s0166g00210.t01	Wine grape	cytosol	27.14	10.1

Protein Annotations

EntrezGene:100259340	wikigene:100259340	Gene3D:2.130.10.30	MapMan:35.1	ProteinID:CBI21635	ProteinID:CBI21635.3
UniProt:D7SWI6	EMBL:FN595233	InterPro:IPR000408	InterPro:IPR009091	EntrezGene:LOC100259340	wikigene:LOC100259340
PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF245
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985	UniParc:UPI00015CA07F	ArrayExpress:VIT_07s0031g02850	EnsemblPlantsGene:VIT_07s0031g02850
EnsemblPlants:VIT_07s0031g02850.t01	RefSeq:XP_002273073	RefSeq:XP_002273073.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:-:19458954..19493291

Molecular Weight (calculated)

44901.1 Da

IEP (calculated)

7.183

GRAVY (calculated)

-0.133

Length

420 amino acids

Sequence
(BLAST)

001: MWRSCMRVSQ SALQSKLGLG FCRRLSSSEP RKRFAALWGN GDFGRLGLGS LESQWRPAVC SAFDHHSLVA IACGGAHTLF LTESGCVYAA GLNDFGQLGV
101: SVDKNYTTEP LEVSALPKKI IHIAAGYYHS AAITADGELY MWGKNSNGQL GLGKKAANAV SVPSKVECLN GISIKMVALG SEHSVAATDQ GEALSWGAGG
201: SGRLGHGHES SLLGFFRTSS EYRPRLIRRL EGIKVKNVAA GLLHSACIDE NGSVFIFGER AMDKFGFREA KNATAPSMIS ELPYSKQVAC GGYHTCVISS
301: SGELFTWGSN ENGCLGMGFM ETIHFPERIE GPFSKNPVSQ VSCGWKHTAA ISEGNVFTWG WGGSYGTFSD DGHSSGGQLG QGSDVDHIKP KMVEFEESVR
401: ALQVSCGFNH TGAILEYIEA

Best Arabidopsis Sequence Match ( AT5G08710.1 )
(BLAST)

001: MLTRAIGRVR IPVSRIQGSN CTSGLLKDSK LGPIGVCCSR WVSSESGKRF AAMWGSGDYG RLGLGNLDSQ WTPAVCSALS DHSITAVACG GAHTLFLTET
101: RRVFATGLND CGQLGVSDVK SHAMDPLEVS GLDKDILHIS AGYYHSAAIT VDGELYMWGK NSSGQLGLGK KAARVVRVPT KVEALHGITI QSVALGSEHS
201: VAVTDGGEVL SWGGGGSGRL GHGHQSSLFG ILRSNSEFTP RLIKELEGIK VTNVAAGLLH SACTDENGSA FMFGEKSINK MGFGGVRNAT TPSIISEVPY
301: AEEVACGGYH TCVVTRGGEL YTWGSNENGC LGTDSTYVSH SPVRVEGPFL ESTVSQVSCG WKHTAAISDN NVFTWGWGGS HGTFSVDGHS SGGQLGHGSD
401: VDYARPAMVD LGKNVRAVHI SCGFNHTAAV LEHF

Arabidopsis Description

RUG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.