Factsheet for VIT_12s0057g00540.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
extracellular 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g02170.t01	Wine grape	cytosol	88.17	18.06
VIT_17s0000g05980.t01	Wine grape	endoplasmic reticulum	64.52	17.37
VIT_01s0026g01520.t01	Wine grape	cytosol	28.49	13.38
KRG99112	Soybean	cytosol	69.89	13.27
KRH45886	Soybean	nucleus	64.52	12.61
VIT_07s0031g02850.t01	Wine grape	mitochondrion	27.42	12.14
PGSC0003DMT400059356	Potato	cytosol	67.2	12.12
HORVU7Hr1G038070.12	Barley	cytosol	59.68	11.77
VIT_07s0031g02560.t01	Wine grape	cytosol	27.96	11.69
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	67.2	11.38
VIT_06s0009g03550.t01	Wine grape	nucleus	67.2	11.29
TraesCS7A01G185400.1	Wheat	cytosol	60.22	11.07
TraesCS7B01G090600.1	Wheat	cytosol	59.68	10.88
TraesCS7D01G187100.3	Wheat	cytosol	59.14	10.77
CDY28580	Canola	plasma membrane	58.6	10.44
CDY44086	Canola	plasma membrane, vacuole	58.6	10.36
VIT_05s0049g01140.t01	Wine grape	cytosol	56.99	9.99
AT1G69710.1	Thale cress	cytosol	55.91	9.99
VIT_19s0014g03080.t01	Wine grape	cytosol	25.27	9.55
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	58.06	9.33
VIT_14s0006g03240.t01	Wine grape	cytosol	19.35	9.11
VIT_18s0166g00210.t01	Wine grape	cytosol	52.69	8.68
VIT_04s0079g00290.t01	Wine grape	cytosol	46.77	8.66
VIT_14s0083g01020.t01	Wine grape	cytosol	22.04	8.58
GSMUA_Achr4P00510_001	Banana	cytosol	38.71	7.49
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	11.29	6.38
VIT_01s0137g00230.t01	Wine grape	cytosol	17.74	6.18
GSMUA_Achr7P20980_001	Banana	cytosol	39.78	5.09

Protein Annotations

Gene3D:2.130.10.30	MapMan:35.1	ProteinID:CCB51713	ProteinID:CCB51713.1	UniProt:F6HHL7	EMBL:FN595759
InterPro:IPR000408	InterPro:IPR009091	PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012
PANTHER:PTHR22870	PANTHER:PTHR22870:SF325	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985	UniParc:UPI0002108AA1
ArrayExpress:VIT_12s0057g00540	EnsemblPlantsGene:VIT_12s0057g00540	EnsemblPlants:VIT_12s0057g00540.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:9101208..9101846

Molecular Weight (calculated)

19714.6 Da

IEP (calculated)

6.500

GRAVY (calculated)

0.115

Length

186 amino acids

Sequence
(BLAST)

001: MGGGVHRVGS SSSTKINALL PKALESTVVL DVHSIACGGK HVVLVTKKGE VFSWGEECGS RLGHGAEVDV SHPKLIDAFC GMNIELVACG EYHSCVITHS
101: RDLYTWEDGT HNSGLLRHGS EASHWILKKV SGPMEGMHVS YVACGPWHIV VVTSAGQLFT FGDGTFGALG LEDFEVMKLI GPSPAS

Best Arabidopsis Sequence Match ( AT4G14368.1 )
(BLAST)

0001: MKTDGMADPS SYVNHDRDID QALVSLKKGT QLLKYSRKGR PKFRSFRLSP DETTLFWLSH GEEKGLKLAT VSRILPGQRT AVFRRYLRPE KDYLSFSLIY
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEVSIHDSDC FSTGRPSTAS IDFAPNNTRR GRTSIDLGIQ NSPTKFGSSD VGYERGNMLR
0201: PSTDGFRISV SSTPSCSTGT SGPDDIESLG DVYVWGEVWS DGISPDGVVN STTVKIDVLI PKPLESNVVL DVHQIACGVR HIALVTRQGE VFTWEEEAGG
0301: RLGHGIQVDV CRPKLVEFLA LTNIDFVACG EYHTCAVSTS GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT
0401: FGDGAFGVLG HGDRESVSYP KEVKMLSGLK TLKVACGVWH TVAIVEVMNQ TGTSTSSRKL FTWGDGDKNR LGHGNKETYL LPTCVSSLID YNFNQIACGH
0501: TFTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEISC GDHHVAVLTS RSEVFTWGKG SNGRLGHGDK DDRKTPTLVE ALRERHVKSI
0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYTKLK AGESGYNSNV ANRNSTTPTR
0701: SLDGTGRPDR DIRSSRILLS PKTEPVKYSE VRSSRSESSI VRASQVPALQ QLRDVAFPSS LSAIQNAFKP VASSSTSTLP SGTRSSRISS PPRSSGFSRG
0801: MIDTLKKSNG VINKEMTKLQ SQIKNLKEKC DNQGTEIQRL KKTAREASDL AVKHSSKHKA ATEVMKSVAE HLRELKEKLP PEVSRCEAFE SMNSQAEAYL
0901: NASEASESCL PTTSLGMGQR DPTPSTNTQD QNIEEKQSSN GGNMRSQEPS GTTEASSSSK GGGKELIEQF EPGVYVTYVL HKNGGKIFRR VRFSFFVANG
1001: DLMSIKQKNG GIAKKIGCLR GIVIMLHHRV QRLLIQFQHQ LNLNHQLLIQ FLHQLNLNHQ LLIQFLHQLN LNHQLLLHNR ILIKQRIQKK FLMKASHHVY
1101: NSSLAK

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:F4JVE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.