Factsheet for VIT_07s0031g02560.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0059g01420.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63860.1	VIT_12s0059g01420.t01	AT2G32950.1	19165148

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029198.1-P	Field mustard	cytosol	75.28	81.31
AT5G63860.1	Thale cress	cytosol	80.0	80.91
Bra024242.1-P	Field mustard	cytosol	74.38	80.54
Solyc05g018620.2.1	Tomato	cytosol	55.51	80.46
Bra037755.1-P	Field mustard	cytosol	75.06	80.29
CDY31347	Canola	cytosol	78.65	80.28
CDX81201	Canola	cytosol	78.88	79.77
GSMUA_Achr6P17690_001	Banana	cytosol	78.65	79.73
CDY43762	Canola	cytosol	76.63	79.67
CDY60046	Canola	cytosol	79.33	78.79
GSMUA_Achr3P19000_001	Banana	nucleus	79.1	78.4
CDX84451	Canola	cytosol	77.75	77.58
CDY39843	Canola	cytosol	70.34	77.48
EES10837	Sorghum	cytosol	74.83	75.17
TraesCS2B01G323100.1	Wheat	unclear	74.61	75.11
Os04t0435700-01	Rice	plasma membrane	75.96	74.61
Zm00001d003632_P003	Maize	extracellular	74.16	74.49
TraesCS2D01G304900.2	Wheat	cytosol	74.16	74.49
TraesCS2A01G306400.3	Wheat	cytosol	74.16	74.49
HORVU2Hr1G076180.1	Barley	cytosol, endoplasmic reticulum	73.71	74.38
Os02t0554100-01	Rice	cytosol, plasma membrane	74.83	73.51
KRH59606	Soybean	cytosol	71.69	73.0
KRH53944	Soybean	plastid	75.96	71.31
HORVU6Hr1G030600.2	Barley	plasma membrane	69.66	70.14
TraesCS6B01G180900.1	Wheat	cytosol	63.6	69.88
TraesCS6D01G142500.1	Wheat	golgi	68.99	69.77
KRH63996	Soybean	nucleus	75.28	69.5
TraesCS6A01G153100.1	Wheat	golgi	69.44	65.74
KRH40960	Soybean	cytosol	49.21	64.79
VIT_07s0031g02850.t01	Wine grape	mitochondrion	26.52	28.1
VIT_12s0057g00540.t01	Wine grape	cytosol, mitochondrion	11.69	27.96
VIT_14s0006g03240.t01	Wine grape	cytosol	23.6	26.58
VIT_19s0014g03080.t01	Wine grape	cytosol	26.52	23.98
VIT_01s0026g01520.t01	Wine grape	cytosol	21.12	23.74
VIT_14s0083g01020.t01	Wine grape	cytosol	24.04	22.38
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	15.51	20.97
VIT_01s0137g00230.t01	Wine grape	cytosol	23.15	19.29
VIT_17s0000g05980.t01	Wine grape	endoplasmic reticulum	26.29	16.93
VIT_01s0026g02170.t01	Wine grape	cytosol	33.71	16.52
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	35.51	14.39
VIT_06s0009g03550.t01	Wine grape	nucleus	35.06	14.09
VIT_05s0049g01140.t01	Wine grape	cytosol	33.26	13.95
VIT_18s0166g00210.t01	Wine grape	cytosol	34.16	13.46
VIT_04s0079g00290.t01	Wine grape	cytosol	25.17	11.14

Protein Annotations

EntrezGene:100256038	wikigene:100256038	Gene3D:2.130.10.30	MapMan:26.1.3.1	ProteinID:AGG82479	ProteinID:AGG82479.1
EMBL:AM448292	ProteinID:CAN67581	ProteinID:CAN67581.1	ProteinID:CBI21608	ProteinID:CBI21608.3	UniProt:D7SWF9
EMBL:FN595233	GO:GO:0000785	GO:GO:0003674	GO:GO:0003682	GO:GO:0004871	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009411	GO:GO:0009605
GO:GO:0009628	GO:GO:0009649	GO:GO:0009881	GO:GO:0009987	GO:GO:0010224	GO:GO:0038023
GO:GO:0042802	GO:GO:0042803	InterPro:IPR000408	InterPro:IPR009091	EMBL:JX867716	PFAM:PF00415
PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF317	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SUPFAM:SSF50985	TIGR:TC62378	UniParc:UPI00015CA289	EntrezGene:UVR1	wikigene:UVR1
InterPro:UVR8	ArrayExpress:VIT_07s0031g02560	EnsemblPlantsGene:VIT_07s0031g02560	EnsemblPlants:VIT_07s0031g02560.t01	unigene:Vvi.19199	:

Description

No Description!

Coordinates

chr7:-:18802284..18814275

Molecular Weight (calculated)

47725.7 Da

IEP (calculated)

6.126

GRAVY (calculated)

-0.366

Length

445 amino acids

Sequence
(BLAST)

001: MADVGGTMSE VSAPVRRVLL ISAGASHSVA LLSGNVVCSW GRGEDGQLGH GDAEDRLSPT YLSALDGHEV VSVTCGADHT TAYSESFTQV YSWGWGDFGR
101: LGHGNSSDLF TPQPIKALHG LRIKQIACGD SHCLAVTMDG EVQSWGRNQN GQLGLGTTED SLVPQKIQAF QGVSVKMVAA GAEHTAAVTE DGELYGWGWG
201: RYGNLGLGDR NDRLVPEKVS TVEGVKMVKV ACGWRHTISV SSSGGLYTYG WSKYGQLGHG DFEDHLTPHK LEALQENLIS EISGGWRHTM ALTSDGKLYG
301: WGWNKFGQVG VGDNVDHCSP VQVKFPHEQK VVHISCGWRH TLAVTERQNV FSWGRGTNGQ LGHGESIDRN IPKMIEVLSA DGSGGQQIET SKVDPSTGRI
401: WVSPSERYAV VPDETGSTQT GVSVKGNGND ASVPESDVKR IRLAE

Best Arabidopsis Sequence Match ( AT5G63860.1 )
(BLAST)

001: MAEDMAADEV TAPPRKVLII SAGASHSVAL LSGDIVCSWG RGEDGQLGHG DAEDRPSPTQ LSALDGHQIV SVTCGADHTV AYSQSGMEVY SWGWGDFGRL
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI

Arabidopsis Description

UVR8Ultraviolet-B receptor UVR8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.