Factsheet for Os02t0554100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0771100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63860.1	Os02t0771100-01	AT2G32950.1	19165148

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G180900.1	Wheat	cytosol	72.85	81.48
TraesCS6D01G142500.1	Wheat	golgi	78.81	81.14
HORVU6Hr1G030600.2	Barley	plasma membrane	78.37	80.32
Os04t0435700-01	Rice	plasma membrane	79.69	79.69
GSMUA_Achr3P19000_001	Banana	nucleus	76.16	76.84
GSMUA_Achr6P17690_001	Banana	cytosol	73.95	76.31
TraesCS6A01G153100.1	Wheat	golgi	78.59	75.74
VIT_07s0031g02560.t01	Wine grape	cytosol	73.51	74.83
Bra037755.1-P	Field mustard	cytosol	67.99	74.04
AT5G63860.1	Thale cress	cytosol	71.74	73.86
CDX81201	Canola	cytosol	71.52	73.64
Bra029198.1-P	Field mustard	cytosol	66.89	73.54
CDY31347	Canola	cytosol	70.42	73.17
CDY60046	Canola	cytosol	72.19	72.99
Bra024242.1-P	Field mustard	cytosol	65.78	72.51
CDY43762	Canola	cytosol	68.43	72.43
CDY39843	Canola	cytosol	63.13	70.79
Solyc05g018620.2.1	Tomato	cytosol	47.9	70.68
CDX84451	Canola	cytosol	69.09	70.18
KRH59606	Soybean	cytosol	64.02	66.36
KRH63996	Soybean	nucleus	69.09	64.94
KRH53944	Soybean	plastid	67.55	64.56
KRH40960	Soybean	cytosol	44.59	59.76
Os08t0430700-02	Rice	cytosol	23.84	27.34
Os09t0560450-01	Rice	mitochondrion	23.84	24.71
Os11t0545800-01	Rice	mitochondrion	23.18	24.71
Os03t0599600-01	Rice	mitochondrion	10.15	24.21
Os04t0226400-01	Rice	plastid	11.48	23.96
Os01t0964800-01	Rice	mitochondrion	29.58	23.14
Os01t0777800-01	Rice	cytosol	19.65	22.19
Os02t0597000-01	Rice	cytosol	22.08	18.62
Os12t0284000-01	Rice	cytosol	21.63	18.35
Os05t0384800-01	Rice	cytosol	35.54	14.82
Os01t0952300-00	Rice	cytosol	35.76	14.17
Os05t0106700-00	Rice	mitochondrion	29.36	14.15
Os04t0686200-01	Rice	plasma membrane	31.35	13.43
Os01t0700200-01	Rice	cytosol	30.91	13.41
Os05t0545200-00	Rice	cytosol	29.8	13.31
Os04t0583700-00	Rice	cytosol	27.15	11.9
Os08t0430600-01	Rice	plastid	1.32	3.77
Os02t0684900-01	Rice	cytosol	2.43	2.55
Os09t0560500-01	Rice	mitochondrion, plastid	0.44	0.96

Protein Annotations

Gene3D:2.130.10.30	MapMan:26.1.3.1	EntrezGene:4329648	EMBL:AK069920	ProteinID:BAD33304.1	ProteinID:BAF09029.1
ProteinID:BAS79194.1	ncoils:Coil	GO:GO:0003674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009628	GO:GO:0009881	GO:GO:0009987
GO:GO:0010224	GO:GO:0038023	GO:GO:0042803	InterPro:IPR000408	InterPro:IPR009091	EnsemblPlantsGene:Os02g0554100
EnsemblPlants:Os02t0554100-01	PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PANTHER:PTHR22870
PANTHER:PTHR22870:SF317	UniProt:Q69SU2	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985	UniParc:UPI0000358BC7
InterPro:UVR8	RefSeq:XP_015626122.1	SEG:seg	:	:	:

Description

Similar to UVB-resistance protein UVR8. (Os02t0554100-01)

Coordinates

chr2:+:20913876..20919054

Molecular Weight (calculated)

48273.5 Da

IEP (calculated)

5.505

GRAVY (calculated)

-0.305

Length

453 amino acids

Sequence
(BLAST)

001: MHSTGMEMEV EVAGDDEAVP EAPERSVVLI SAGASHSVAL LSGGVVCSWG RGEDGQLGHG DAEDRPVPTV LTAAFDDAPG GVASVVICGA DHTTAYSDEE
101: LQLYSWGWGD FGRLGHGNSS DVFNPQPIQA LQGVRITQIA CGDSHCLAVT VAGHVHSWGR NQNGQLGLGN TEDSLLPQKI QAFEGVRVKM IAAGAEHTAA
201: VTEDGDLYGW GWGRYGNLGL GDRDDRLIPE KVSSVNGQKM VLVACGWRHT ITVSSSGSIY TYGWSKYGQL GHGDFEDHLV PHKLEALKDT TISQISGGWR
301: HTMALAADGK LYGWGWNKFG QVGVGDNEDH CSPVQVNFPN EQKVVQVACG WRHTLALTEA KNVFSWGRGT SGQLGHGEIV DRNIPKMIDA LSSDGSACKQ
401: LESSKAVPMS AKVWVSPSER YAIVPDEKAG KGIPAGNGTE THVPQGDVKR MRV

Best Arabidopsis Sequence Match ( AT5G63860.1 )
(BLAST)

001: MAEDMAADEV TAPPRKVLII SAGASHSVAL LSGDIVCSWG RGEDGQLGHG DAEDRPSPTQ LSALDGHQIV SVTCGADHTV AYSQSGMEVY SWGWGDFGRL
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI

Arabidopsis Description

UVR8Ultraviolet-B receptor UVR8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.