Factsheet for Os04t0686200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13137	Sorghum	cytosol	82.5	81.95
TraesCS2A01G581400.1	Wheat	cytosol	82.12	81.12
TraesCS2B01G609200.1	Wheat	cytosol	81.74	80.75
TraesCS2D01G589800.1	Wheat	cytosol	81.65	80.65
HORVU2Hr1G124270.22	Barley	cytosol, mitochondrion, nucleus	81.55	80.11
Zm00001d002876_P001	Maize	mitochondrion	79.66	77.46
HORVU3Hr1G108180.1	Barley	mitochondrion	11.16	70.66
Os01t0964800-01	Rice	mitochondrion	34.72	63.39
KRH08750	Soybean	cytosol	37.94	62.95
GSMUA_Achr8P07850_001	Banana	cytosol	60.17	57.56
CDY70949	Canola	cytosol	19.21	57.34
KRG91629	Soybean	cytosol	59.32	57.1
VIT_18s0166g00210.t01	Wine grape	cytosol	60.83	56.95
KRH35179	Soybean	cytosol	60.08	56.7
KRH30228	Soybean	cytosol	21.57	56.02
KRH70333	Soybean	cytosol	59.32	55.98
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	56.67	55.57
CDY47138	Canola	cytosol	54.87	55.4
PGSC0003DMT400002081	Potato	cytosol	58.94	55.33
Bra016214.1-P	Field mustard	cytosol	54.87	55.24
CDY11586	Canola	cytosol	54.97	55.18
Solyc04g071040.2.1	Tomato	cytosol	58.75	55.15
CDX88324	Canola	cytosol	54.68	54.48
Bra003698.1-P	Field mustard	mitochondrion	55.44	54.41
AT1G76950.1	Thale cress	cytosol	56.67	54.31
Bra015708.1-P	Field mustard	cytosol	55.06	54.19
CDX87557	Canola	cytosol	54.87	54.05
CDY48550	Canola	cytosol	49.57	53.47
KRH08736	Soybean	endoplasmic reticulum	35.1	53.23
Os05t0106700-00	Rice	mitochondrion	47.11	52.98
GSMUA_AchrUn_...	Banana	nucleus	57.71	52.91
CDX68076	Canola	cytosol	39.74	50.6
Os05t0545200-00	Rice	cytosol	45.41	47.34
KRH30227	Soybean	cytosol	19.49	45.68
Os01t0700200-01	Rice	cytosol	44.75	45.31
Os05t0384800-01	Rice	cytosol	46.36	45.12
Os01t0952300-00	Rice	cytosol	45.41	41.99
Os04t0583700-00	Rice	cytosol	33.4	34.14
Os02t0554100-01	Rice	cytosol, plasma membrane	13.43	31.35
Os04t0435700-01	Rice	plasma membrane	13.24	30.91
Os09t0560450-01	Rice	mitochondrion	12.2	29.52
Os11t0545800-01	Rice	mitochondrion	11.26	28.0
Os01t0777800-01	Rice	cytosol	10.22	26.93
Os08t0430700-02	Rice	cytosol	9.65	25.82
Os04t0226400-01	Rice	plastid	5.3	25.81
Os12t0284000-01	Rice	cytosol	12.58	24.91
Os02t0684900-01	Rice	cytosol	10.03	24.59
Os03t0599600-01	Rice	mitochondrion	4.35	24.21
Os02t0597000-01	Rice	cytosol	11.92	23.46
Os08t0430600-01	Rice	plastid	1.89	12.58
Os09t0560500-01	Rice	mitochondrion, plastid	1.61	8.17

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4337469	ProteinID:BAF16239.1
ProteinID:BAS91737.1	InterPro:BRX_N	InterPro:Brevis_radix_dom	ProteinID:CAD41927.2	ncoils:Coil	ProteinID:EEE61945.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091
InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	EnsemblPlantsGene:Os04g0686200	EnsemblPlants:Os04t0686200-01
PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf
InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514
PANTHER:PTHR22870	PANTHER:PTHR22870:SF194	UniProt:Q7XTM0	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064
SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI000021C755	RefSeq:XP_015637135.1	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Similar to Chromosome condensation regulator protein (Fragment). (Os04t0686200-01)

Coordinates

chr4:-:35067307..35074531

Molecular Weight (calculated)

115540.0 Da

IEP (calculated)

8.289

GRAVY (calculated)

-0.543

Length

1057 amino acids

Sequence
(BLAST)

0001: MADPVDIDKA LIALKKGTQL LKYGRKGKPK FTPFRLSNDE STLIWVSNNK EKSLKLSSVS RVLSGQRTLV FQRFLLPEKD HLSFSLIYND GKRSLDLICK
0101: DKVEAEVWFA GLNVLISPGQ HGSQHQHIDG IRNGALSFEC GRDSSLSSSS AYTTDSFENK LSSANSAKDR SSGEFTYSER TDVSDMQVKG ASSDIRISVS
0201: SALSTSSHGS GDDSESFGDV YVWGEVMCDT TCRQGSDSNA YSATAATDIL VPKPLESNVM LDVSYVACGV KHAALVTRQA EVFTWGEECS GRLGHGAGTS
0301: IFQPRLVESL SICNVETIAC GEFHTCAITA TGDLYTWGDG THNAGLLGHG SNVSHWIPKR VSGPLEGLQV SAVSCGTWHT ALITSSGKLY TFGDGTFGVL
0401: GHGNRETISY PKEVESLKGL RTISVSCGVW HTAAVVEVIM AQSNTSSGKL FTWGDGDKYR LGHGDRSSKL KPTCVPSLID YNFHKAVCGH TLTIGLTTSG
0501: HIFTAGSSVY GQLGNPNNDG RYPRLVEEKL GGGGVVEVAC GAYHVAVLTQ SGEVYTWGKG ANGRLGHGDI ADRKTPTFVE ALRDRSVKRI ACGSGFTAAI
0601: CQHKSVSGME QSQCSSCRQP FGFTRKRHNC YNCGLVHCHS CSSKKALRAA LSPNPGKPYR VCDSCYLKLS KVLDSGIGHN KNNTPRIPGD SKADKMDSKG
0701: NRVASANSSD MIKNLDVKAA KQTKKYDYPP QFPAILQLKD IPFIGAADQQ PNDSTYSSPL LRLPNLNSSS SLSSESFDIL RDANELLKQE VQKLKEEVNS
0801: LRQQREQQDA DLQKSEAKAH EAMTLASEEA SKSKAAKDVI KSLTAQLKEM AERLPPASCD TKQTRQPYLP GGAVSPDTGR ENQKRYEPGS FQYPQTPTSV
0901: ASARFNGFLA QAHQISEPNG NTMVPHDSRH ENNGNTKEFP VAQQMTNGGM TGYRPRTEDH DRRETERFQI NLHGFNMRGS SSPSNQVEAE WIEQYEPGVY
1001: LTLVSLRDGT KELKRVRFSR RRFGEHQAES WWNDNREKVY DKYNVRGTDR ISSVMTA

Best Arabidopsis Sequence Match ( AT5G42140.1 )
(BLAST)

0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.