Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH08750 | Soybean | cytosol | 40.45 | 70.17 |
GSMUA_AchrUn_... | Banana | nucleus | 68.78 | 65.92 |
KRG91629 | Soybean | cytosol | 64.89 | 65.3 |
VIT_18s0166g00210.t01 | Wine grape | cytosol | 65.88 | 64.48 |
GSMUA_Achr2P20470_001 | Banana | endoplasmic reticulum, plasma membrane | 57.19 | 64.03 |
KRH35179 | Soybean | cytosol | 64.89 | 64.02 |
CDY70949 | Canola | cytosol | 20.27 | 63.28 |
KRH30228 | Soybean | cytosol | 23.08 | 62.65 |
Solyc04g071040.2.1 | Tomato | cytosol | 63.44 | 62.26 |
PGSC0003DMT400002081 | Potato | cytosol | 63.35 | 62.17 |
KRH70333 | Soybean | cytosol | 62.99 | 62.14 |
AT5G42140.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 60.54 | 62.06 |
GSMUA_Achr6P13030_001 | Banana | endoplasmic reticulum | 53.94 | 60.88 |
CDY47138 | Canola | cytosol | 57.65 | 60.84 |
Bra016214.1-P | Field mustard | cytosol | 57.56 | 60.57 |
CDY11586 | Canola | cytosol | 57.47 | 60.3 |
AT1G76950.1 | Thale cress | cytosol | 60.09 | 60.2 |
Os04t0686200-01 | Rice | plasma membrane | 57.56 | 60.17 |
CDX88324 | Canola | cytosol | 57.38 | 59.75 |
Bra015708.1-P | Field mustard | cytosol | 57.65 | 59.31 |
CDX87557 | Canola | cytosol | 57.47 | 59.18 |
Bra003698.1-P | Field mustard | mitochondrion | 57.56 | 59.05 |
EES13137 | Sorghum | cytosol | 55.84 | 57.99 |
KRH08736 | Soybean | endoplasmic reticulum | 36.56 | 57.96 |
TraesCS2B01G609200.1 | Wheat | cytosol | 56.02 | 57.85 |
TraesCS2A01G581400.1 | Wheat | cytosol | 55.93 | 57.76 |
CDY48550 | Canola | cytosol | 51.22 | 57.76 |
TraesCS2D01G589800.1 | Wheat | cytosol | 55.84 | 57.66 |
HORVU3Hr1G108180.1 | Barley | mitochondrion | 8.6 | 56.89 |
HORVU2Hr1G124270.22 | Barley | cytosol, mitochondrion, nucleus | 55.2 | 56.69 |
Zm00001d002876_P001 | Maize | mitochondrion | 54.93 | 55.84 |
CDX68076 | Canola | cytosol | 41.81 | 55.66 |
KRH30227 | Soybean | cytosol | 21.63 | 52.99 |
GSMUA_Achr8P00080_001 | Banana | endoplasmic reticulum | 43.62 | 51.55 |
GSMUA_Achr5P08220_001 | Banana | cytosol | 49.05 | 49.27 |
GSMUA_Achr4P00510_001 | Banana | cytosol | 40.09 | 46.1 |
GSMUA_Achr1P02140_001 | Banana | cytosol | 32.58 | 40.31 |
GSMUA_Achr5P11650_001 | Banana | cytosol | 33.39 | 38.04 |
GSMUA_Achr6P17690_001 | Banana | cytosol | 14.03 | 35.31 |
GSMUA_Achr3P19000_001 | Banana | nucleus | 13.3 | 32.74 |
GSMUA_Achr8P06920_001 | Banana | cytosol | 9.23 | 31.19 |
GSMUA_Achr7P20980_001 | Banana | cytosol | 40.54 | 30.83 |
GSMUA_Achr5P12060_001 | Banana | mitochondrion | 11.86 | 28.98 |
GSMUA_Achr2P10610_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 12.85 | 28.86 |
GSMUA_Achr1P00100_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 12.67 | 28.46 |
GSMUA_Achr10P... | Banana | mitochondrion | 10.68 | 28.1 |
GSMUA_Achr6P29750_001 | Banana | cytosol | 9.86 | 27.46 |
GSMUA_Achr10P... | Banana | cytosol | 11.95 | 27.33 |
GSMUA_Achr9P15560_001 | Banana | cytosol | 8.96 | 26.61 |
GSMUA_Achr9P02110_001 | Banana | plastid | 12.13 | 24.91 |
GSMUA_AchrUn_... | Banana | cytosol | 11.76 | 24.39 |
GSMUA_AchrUn_... | Banana | cytosol, plastid | 11.76 | 24.21 |
Protein Annotations
Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:BRX_N | InterPro:Brevis_radix_dom |
ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr8G07850_001 | EnsemblPlants:GSMUA_Achr8P07850_001 |
EnsemblPlants:GSMUA_Achr8T07850_001 | InterPro:IPR000408 | InterPro:IPR001849 | InterPro:IPR009091 | InterPro:IPR011993 | InterPro:IPR013083 |
InterPro:IPR013591 | InterPro:IPR017455 | UniProt:M0TNI8 | PFAM:PF00415 | PFAM:PF01363 | PFAM:PF08381 |
PFAM:PF13713 | PFAM:PF16457 | InterPro:PH-like_dom_sf | InterPro:PH_domain | PRINTS:PR00633 | ScanProsite:PS00626 |
PFscan:PS50012 | PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF91 | InterPro:RCC1/BLIP-II |
InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50729 | SUPFAM:SSF50985 | SUPFAM:SSF57903 | UniParc:UPI0002956DAF |
InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
Putative Probable E3 ubiquitin-protein ligase HERC1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G07850_001]
Coordinates
chr8:-:5244296..5260011
Molecular Weight (calculated)
120289.0 Da
IEP (calculated)
8.640
GRAVY (calculated)
-0.453
Length
1105 amino acids
Sequence
(BLAST)
(BLAST)
0001: MADLLGSANA DRDIDKALIA LKKGAQLLKY GRKGKPKFCP FRLSNDESTL IWFSGGGERT LKLASVLRIV PGQRTPVFQR YLRPDRDYLS FSLIYNDGKR
0101: SLDLICKDKV EAEVWFSGLK ALISTGQYGR SKIDGWNNGG LNTDDSRGSA SNSISDQSIG STLDSSESRL TSSSIPKNLS FEYSVTSDIS DATNMHVKGV
0201: SSDGFRVSIS SVPSTSSHGS AQDDFDAAGD VYVWGEVICD TSTRISADKN SSPSSARSDI LLPKPIESNV VLDVHHVACG VRHAALVTRQ GELFTWGEES
0301: GGRLGHGVGM DIIHPRLLES LSTFNVDYVA CGEFHTCAVT ATGELYTWGD GAHNAGLLGH GTNVSHWMPK RVSGPLEGLQ VSYVSCGVWH TAIVTTAGQL
0401: FTFGDGTFGV LGHGNRETVL YPREVESLAG LKTIAVSCGV WHTAAVVEVM VTQSSASSGK LFTWGDGDKY RLGHGDKVAR LKPTCVPSLI DYNFHRLACG
0501: HSLTIGLTTS GQVFTMGSNV YGQLGNPRSD GKLPCMVEDK LAGEPVGEVA CGSYHIAVLT TRGEVYTWGK GANGRLGHGD FEDRKTPTLV EALKDRPVKQ
0601: ISCGSNFTAA ICQHKWISGA EQSQCSACRQ AFGFTRKKHN CYNCGLVHCH QCSSRKALRA ALSPNPGKPY RVCDSCYVKL NSGLEPGGVN NKKNAKPWIS
0701: TESKDKFDKV DTLPKASLSR NLELIKSLDI KTAKNGKNTN FMYMTQNPKG SSVSPLKSLA FPGGIDMLQA VSKPVQTTGA NSANRSRAVS PFSRKSSPPR
0801: STTPTPTTSG LSFTKNISDS LKKTNDLLNQ ELLKLRSEVD SLRQRCERQD FELQKAEKKA KEAMTVAAEE STKSKAAKEV IKSLTAQLKE MAERLPHGTY
0901: GTNTTIPMHL PNGVESHAIQ HIGSSGEHLF INDAGNIANM APSRTGYLGQ INENSGDNTS VREIYRPNET SAPPTPKIVN AKMEQNLNPQ NAGQGEMWAS
1001: STRLKDIDSR TIASPQSHDD AVSAVRSPSE LSNDVEAEWI EQFEPGVYIT LVTLRDGTRD LKRVRFSRRR FGEQQAEAWW SENRERVYEK YNFRVPDRTS
1101: SAMLT
0101: SLDLICKDKV EAEVWFSGLK ALISTGQYGR SKIDGWNNGG LNTDDSRGSA SNSISDQSIG STLDSSESRL TSSSIPKNLS FEYSVTSDIS DATNMHVKGV
0201: SSDGFRVSIS SVPSTSSHGS AQDDFDAAGD VYVWGEVICD TSTRISADKN SSPSSARSDI LLPKPIESNV VLDVHHVACG VRHAALVTRQ GELFTWGEES
0301: GGRLGHGVGM DIIHPRLLES LSTFNVDYVA CGEFHTCAVT ATGELYTWGD GAHNAGLLGH GTNVSHWMPK RVSGPLEGLQ VSYVSCGVWH TAIVTTAGQL
0401: FTFGDGTFGV LGHGNRETVL YPREVESLAG LKTIAVSCGV WHTAAVVEVM VTQSSASSGK LFTWGDGDKY RLGHGDKVAR LKPTCVPSLI DYNFHRLACG
0501: HSLTIGLTTS GQVFTMGSNV YGQLGNPRSD GKLPCMVEDK LAGEPVGEVA CGSYHIAVLT TRGEVYTWGK GANGRLGHGD FEDRKTPTLV EALKDRPVKQ
0601: ISCGSNFTAA ICQHKWISGA EQSQCSACRQ AFGFTRKKHN CYNCGLVHCH QCSSRKALRA ALSPNPGKPY RVCDSCYVKL NSGLEPGGVN NKKNAKPWIS
0701: TESKDKFDKV DTLPKASLSR NLELIKSLDI KTAKNGKNTN FMYMTQNPKG SSVSPLKSLA FPGGIDMLQA VSKPVQTTGA NSANRSRAVS PFSRKSSPPR
0801: STTPTPTTSG LSFTKNISDS LKKTNDLLNQ ELLKLRSEVD SLRQRCERQD FELQKAEKKA KEAMTVAAEE STKSKAAKEV IKSLTAQLKE MAERLPHGTY
0901: GTNTTIPMHL PNGVESHAIQ HIGSSGEHLF INDAGNIANM APSRTGYLGQ INENSGDNTS VREIYRPNET SAPPTPKIVN AKMEQNLNPQ NAGQGEMWAS
1001: STRLKDIDSR TIASPQSHDD AVSAVRSPSE LSNDVEAEWI EQFEPGVYIT LVTLRDGTRD LKRVRFSRRR FGEQQAEAWW SENRERVYEK YNFRVPDRTS
1101: SAMLT
0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.