Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0026g02170.t01 | Wine grape | cytosol | 52.03 | 55.07 |
| GSMUA_Achr8P00080_001 | Banana | endoplasmic reticulum | 53.17 | 54.65 |
| KRH45886 | Soybean | nucleus | 53.38 | 53.89 |
| GSMUA_Achr7P20980_001 | Banana | cytosol | 78.25 | 51.76 |
| GSMUA_Achr5P08220_001 | Banana | cytosol | 58.9 | 51.45 |
| KRG99112 | Soybean | cytosol | 51.3 | 50.31 |
| TraesCS7A01G185400.1 | Wheat | cytosol | 50.68 | 48.12 |
| VIT_17s0000g05980.t01 | Wine grape | endoplasmic reticulum | 34.44 | 47.9 |
| TraesCS7D01G187100.3 | Wheat | cytosol | 50.47 | 47.5 |
| TraesCS7B01G090600.1 | Wheat | cytosol | 50.36 | 47.45 |
| PGSC0003DMT400059356 | Potato | cytosol | 50.78 | 47.33 |
| Solyc03g116360.1.1 | Tomato | cytosol | 45.89 | 46.62 |
| PGSC0003DMT400001620 | Potato | cytosol | 19.15 | 46.0 |
| AT1G69710.1 | Thale cress | cytosol | 48.39 | 44.67 |
| HORVU7Hr1G038070.12 | Barley | cytosol | 43.7 | 44.54 |
| GSMUA_Achr2P20470_001 | Banana | endoplasmic reticulum, plasma membrane | 45.27 | 44.07 |
| CDY28580 | Canola | plasma membrane | 47.76 | 43.97 |
| CDY44086 | Canola | plasma membrane, vacuole | 48.07 | 43.92 |
| Bra007876.1-P | Field mustard | cytosol, nucleus, plasma membrane | 48.39 | 40.16 |
| GSMUA_Achr8P07850_001 | Banana | cytosol | 46.1 | 40.09 |
| GSMUA_Achr1P02140_001 | Banana | cytosol | 37.25 | 40.09 |
| CDX77871 | Canola | cytosol | 39.23 | 39.73 |
| CDY21795 | Canola | cytosol | 39.02 | 39.19 |
| Bra019511.1-P | Field mustard | cytosol | 38.92 | 39.08 |
| VIT_12s0057g00540.t01 | Wine grape | cytosol, mitochondrion | 7.49 | 38.71 |
| GSMUA_Achr6P13030_001 | Banana | endoplasmic reticulum | 39.33 | 38.61 |
| GSMUA_Achr5P11650_001 | Banana | cytosol | 38.5 | 38.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.33 | 36.95 |
| AT3G47660.4 | Thale cress | cytosol | 37.25 | 36.16 |
| GSMUA_Achr6P17690_001 | Banana | cytosol | 14.05 | 30.75 |
| GSMUA_Achr3P19000_001 | Banana | nucleus | 13.53 | 28.95 |
| GSMUA_Achr8P06920_001 | Banana | cytosol | 8.74 | 25.69 |
| GSMUA_Achr10P... | Banana | cytosol | 11.76 | 23.4 |
| GSMUA_Achr10P... | Banana | mitochondrion | 10.2 | 23.33 |
| GSMUA_Achr9P15560_001 | Banana | cytosol | 8.95 | 23.12 |
| GSMUA_Achr1P00100_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 11.76 | 22.97 |
| GSMUA_Achr5P12060_001 | Banana | mitochondrion | 10.51 | 22.35 |
| GSMUA_Achr6P29750_001 | Banana | cytosol | 9.16 | 22.17 |
| GSMUA_Achr2P10610_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 11.24 | 21.95 |
| GSMUA_Achr9P02110_001 | Banana | plastid | 11.86 | 21.19 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 11.45 | 20.48 |
| GSMUA_AchrUn_... | Banana | cytosol | 10.51 | 18.95 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:BRX_N | InterPro:Brevis_radix_dom |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr4G00510_001 | EnsemblPlants:GSMUA_Achr4P00510_001 |
| EnsemblPlants:GSMUA_Achr4T00510_001 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:IPR011993 | InterPro:IPR013083 | InterPro:IPR013591 |
| InterPro:IPR017455 | UniProt:M0SJW8 | PFAM:PF00415 | PFAM:PF01363 | PFAM:PF08381 | PFAM:PF13713 |
| InterPro:PH-like_dom_sf | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | PFscan:PS50178 | PFscan:PS51514 |
| PANTHER:PTHR22870 | PANTHER:PTHR22870:SF301 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50729 |
| SUPFAM:SSF50985 | SUPFAM:SSF57903 | UniParc:UPI000295DC43 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
Putative E3 ubiquitin-protein ligase HERC2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G00510_001]
Coordinates
chr4:+:389353..399575
Molecular Weight (calculated)
105010.0 Da
IEP (calculated)
8.568
GRAVY (calculated)
-0.419
Length
961 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPLRNGPV ERDVEQAITA LKKGAYLLKY GRRGRPKFCP FRLSNDESLL IWYSGRDEKQ LKLSQVYKII PGQRTAIFQR YPRPDKEYQS FSLIYNERSL
101: DLICKDKDEA EAWFVGLKAL ISRGNYRKLR SESKGDRTSS DSPTTYIRKI SPFTSPFSGS DISHKVWQVS RSLLHSESLC KSFCSHSSGA ADITNGQGSA
201: VDTVRVSLSS AVSSSSHGSN HEDFDALGDV FIWGEGIACG KNHAVLVTKQ GEVFSWGEES GGRLGHGNDV DVSQPRLVDA LGGMNVELMA CLHASSVSCG
301: PWHTAVVTSA GQLFTFGDGI FGALGHGDHR STNIPREVEA LRGMRTVRAA CGVWHTAAIV EISDASSDSS DSAMGKLFTW GDGDKGRLGH GDREPRLLPA
401: CVASLSDNIC KVACGHDITV ALTTSGHVYT MGSTVYGQLG NPQTDGKLPT RVEGKISNHF VEEISCGSYH VAVLTSRTEV YTWGKGVNGR LGHGDNDDRN
501: TPTLVEALKD KQVKSVVCGA SFTAIICLHK WVSSADQSIC SGCHLHFGFR RKRHNCYNCG LVFCKACSSR KSTGASLAPN INKLYRVCDE CYTKLRKVVG
601: DGKIPQIPRH QNGSTNQVPG ELADKDSPGP RMQGQFSRLS SFESFKGENR DSRESNNGYP SSSSKFLQVQ ASSKKIFSAS VPGSRVASRS NSPTSCKRSP
701: LHSLAISRDA TITCLEICHD LNPTNEDLRQ EILKLRAQVI SCNHICYFAY ARIITHICLP FKFSVDELAC KSQLLEVELQ KTTKQLTDAK AMVSEETAKG
801: KAAKEVIKSL TSQLKIMADR VPEASLISRN NGSGYTSDSP KLQSIDNTTS NLLPSQLSES NGNLSNPVVC NGNNTLSEKV EWVEQAEPGV YFSISSLPGG
901: DKCLRRVCFS RKRFSEQQAE KWWVENRSRI QEKYTILSGE NSASSSTSAH LAGRIACSTK Q
101: DLICKDKDEA EAWFVGLKAL ISRGNYRKLR SESKGDRTSS DSPTTYIRKI SPFTSPFSGS DISHKVWQVS RSLLHSESLC KSFCSHSSGA ADITNGQGSA
201: VDTVRVSLSS AVSSSSHGSN HEDFDALGDV FIWGEGIACG KNHAVLVTKQ GEVFSWGEES GGRLGHGNDV DVSQPRLVDA LGGMNVELMA CLHASSVSCG
301: PWHTAVVTSA GQLFTFGDGI FGALGHGDHR STNIPREVEA LRGMRTVRAA CGVWHTAAIV EISDASSDSS DSAMGKLFTW GDGDKGRLGH GDREPRLLPA
401: CVASLSDNIC KVACGHDITV ALTTSGHVYT MGSTVYGQLG NPQTDGKLPT RVEGKISNHF VEEISCGSYH VAVLTSRTEV YTWGKGVNGR LGHGDNDDRN
501: TPTLVEALKD KQVKSVVCGA SFTAIICLHK WVSSADQSIC SGCHLHFGFR RKRHNCYNCG LVFCKACSSR KSTGASLAPN INKLYRVCDE CYTKLRKVVG
601: DGKIPQIPRH QNGSTNQVPG ELADKDSPGP RMQGQFSRLS SFESFKGENR DSRESNNGYP SSSSKFLQVQ ASSKKIFSAS VPGSRVASRS NSPTSCKRSP
701: LHSLAISRDA TITCLEICHD LNPTNEDLRQ EILKLRAQVI SCNHICYFAY ARIITHICLP FKFSVDELAC KSQLLEVELQ KTTKQLTDAK AMVSEETAKG
801: KAAKEVIKSL TSQLKIMADR VPEASLISRN NGSGYTSDSP KLQSIDNTTS NLLPSQLSES NGNLSNPVVC NGNNTLSEKV EWVEQAEPGV YFSISSLPGG
901: DKCLRRVCFS RKRFSEQQAE KWWVENRSRI QEKYTILSGE NSASSSTSAH LAGRIACSTK Q
0001: MCILELRLFA AASMADSLRT SFSERDVEQA ITSLKKGSYL LKYGRRGKPK FCPFQLTSDE SALVWYSGKE EKQIKLSQVL RIVPGQRTPT FKRYPRPEKE
0101: YQSFSLICPD RSLDLICKDK DEAEVWVVGL KSLITRVKVS KWKTTIKPEI TSAECPTPHA RRVSPFVTIL DQVIQPSNET STQTRLGKVF SDIVAITAPP
0201: SNNNQTEASG NLFCPFSPTP ANVENSNLRF STNDPFRLSL SSAVSTSSHG SYHEDFDALG DVFVWGESIS DGVLSGTGNS LNSTTEDALL PKALESTIVL
0301: DAQNIACGKC HAVLVTKQGE IFSWGEGKGG KLGHGLETDA QKPKFISSVR GLGFKSLACG DFHTCAITQS GDLYSWGDGT HNVDLLGHGN ESSCWIPKRV
0401: TGDLQGLYVS DVACGPWHTA VVASSGQLFT FGDGTFGALG HGDRRSTSVP REVESLIGLI VTKVACGVWH TAAVVEVTNE ASEAEVDSSR GQVFTWGDGE
0501: KGQLGHGDND TKLLPECVIS LTNENICQVA CGHSLTVSRT SRGHVYTMGS TAYGQLGNPT AKGNFPERVE GDIVEASVEE IACGSYHVAV LTSKSEIYTW
0601: GKGLNGQLGH GNVENKREPA VVGFLREKQV KAITCGSNFT AVICVHKWVP GSEHSLCAGC RNPFNFRRKR HNCYNCGLVF CKVCSSRKSL RAALAPDMNK
0701: PYRVCYGCFT KLKKSRESSP STPTSRTRKL LNMRKSTDVS ERDSLTQKFL SVNARLSSAD SSLHYSERRH HRRDLKPEVN NSNVFPSMNG SLQPVGSPFS
0801: KGSTALPKIP KNMMVKIPGS GMSSRTTSPV SVKSTSPRRS YEVAAAESKQ LKDSFNQDMA GLKEQVEQLA SKAHQLEEEL EKTKRQLKVV TAMAADEAEE
0901: NRSAKEVIRS LTTQLKEMAE KQSQKDSIST NSKHTDKEKS ETVTQTSNQT HIRSMVSQDS QNENNLTSKS FANGHRKQND KPEKVVQDEP GVYLTLLSLP
1001: GGGTELKRVR FSRKQFTEEQ AEKWWGENGA KVCERHNILV S
0101: YQSFSLICPD RSLDLICKDK DEAEVWVVGL KSLITRVKVS KWKTTIKPEI TSAECPTPHA RRVSPFVTIL DQVIQPSNET STQTRLGKVF SDIVAITAPP
0201: SNNNQTEASG NLFCPFSPTP ANVENSNLRF STNDPFRLSL SSAVSTSSHG SYHEDFDALG DVFVWGESIS DGVLSGTGNS LNSTTEDALL PKALESTIVL
0301: DAQNIACGKC HAVLVTKQGE IFSWGEGKGG KLGHGLETDA QKPKFISSVR GLGFKSLACG DFHTCAITQS GDLYSWGDGT HNVDLLGHGN ESSCWIPKRV
0401: TGDLQGLYVS DVACGPWHTA VVASSGQLFT FGDGTFGALG HGDRRSTSVP REVESLIGLI VTKVACGVWH TAAVVEVTNE ASEAEVDSSR GQVFTWGDGE
0501: KGQLGHGDND TKLLPECVIS LTNENICQVA CGHSLTVSRT SRGHVYTMGS TAYGQLGNPT AKGNFPERVE GDIVEASVEE IACGSYHVAV LTSKSEIYTW
0601: GKGLNGQLGH GNVENKREPA VVGFLREKQV KAITCGSNFT AVICVHKWVP GSEHSLCAGC RNPFNFRRKR HNCYNCGLVF CKVCSSRKSL RAALAPDMNK
0701: PYRVCYGCFT KLKKSRESSP STPTSRTRKL LNMRKSTDVS ERDSLTQKFL SVNARLSSAD SSLHYSERRH HRRDLKPEVN NSNVFPSMNG SLQPVGSPFS
0801: KGSTALPKIP KNMMVKIPGS GMSSRTTSPV SVKSTSPRRS YEVAAAESKQ LKDSFNQDMA GLKEQVEQLA SKAHQLEEEL EKTKRQLKVV TAMAADEAEE
0901: NRSAKEVIRS LTTQLKEMAE KQSQKDSIST NSKHTDKEKS ETVTQTSNQT HIRSMVSQDS QNENNLTSKS FANGHRKQND KPEKVVQDEP GVYLTLLSLP
1001: GGGTELKRVR FSRKQFTEEQ AEKWWGENGA KVCERHNILV S
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I287]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.