Factsheet for GSMUA_Achr9P02110_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, plastid	86.43	86.59
Os12t0284000-01	Rice	cytosol	79.93	80.52
VIT_01s0137g00230.t01	Wine grape	cytosol	78.07	78.65
KRG97505	Soybean	cytosol	77.32	77.76
KRH31377	Soybean	cytosol	75.84	76.84
CDY04192	Canola	cytosol	70.07	76.63
CDY39172	Canola	cytosol	70.07	76.63
HORVU5Hr1G034530.6	Barley	cytosol	75.65	76.22
PGSC0003DMT400027900	Potato	cytosol	75.09	75.8
Solyc05g014030.2.1	Tomato	cytosol	74.91	75.61
CDX83586	Canola	cytosol, plastid	73.79	75.05
AT3G26100.5	Thale cress	cytosol, plastid	74.16	75.0
Bra017335.1-P	Field mustard	cytosol	73.61	74.58
Bra025182.1-P	Field mustard	cytosol	73.05	74.29
CDY13609	Canola	cytosol	73.05	74.29
CDX99731	Canola	cytosol, plastid	72.86	73.27
KRH59226	Soybean	cytosol	71.0	71.54
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	22.68	70.52
Bra036349.1-P	Field mustard	cytosol, plastid	71.75	70.31
CDY40988	Canola	cytosol, plastid	71.75	70.31
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	27.51	66.37
GSMUA_AchrUn_...	Banana	cytosol	54.65	55.16
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.65	28.05
GSMUA_Achr5P12060_001	Banana	mitochondrion	22.68	26.99
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	24.16	26.42
GSMUA_Achr9P15560_001	Banana	cytosol	17.29	25.0
GSMUA_Achr6P17690_001	Banana	cytosol	19.52	23.92
GSMUA_Achr3P19000_001	Banana	nucleus	19.14	22.94
GSMUA_Achr6P29750_001	Banana	cytosol	15.61	21.16
GSMUA_Achr10P...	Banana	mitochondrion	15.99	20.48
GSMUA_Achr10P...	Banana	cytosol	17.84	19.88
GSMUA_Achr8P06920_001	Banana	cytosol	11.9	19.57
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	23.05	13.26
GSMUA_Achr8P07850_001	Banana	cytosol	24.91	12.13
GSMUA_Achr5P08220_001	Banana	cytosol	24.72	12.09
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	22.12	12.06
GSMUA_Achr1P02140_001	Banana	cytosol	19.89	11.98
GSMUA_Achr4P00510_001	Banana	cytosol	21.19	11.86
GSMUA_Achr5P11650_001	Banana	cytosol	21.19	11.75
GSMUA_AchrUn_...	Banana	nucleus	24.91	11.62
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	20.45	11.24
GSMUA_Achr7P20980_001	Banana	cytosol	21.56	7.98

Protein Annotations

EnsemblPlants:GSMUA_Achr9P02110_001	EnsemblPlants:GSMUA_Achr9T02110_001	EnsemblPlantsGene:GSMUA_Achr9G02110_001	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI00029590DB	UniProt:M0TWR8
MapMan:35.2	:	:	:	:	:

Description

Putative Probable E3 ubiquitin-protein ligase HERC1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G02110_001]

Coordinates

chr9:-:1578037..1580703

Molecular Weight (calculated)

58179.1 Da

IEP (calculated)

6.505

GRAVY (calculated)

-0.140

Length

538 amino acids

Sequence
(BLAST)

001: MDPTTSGSSS SLPFQTIVDP SLSLVPPLQR TFKRVQRHCF GDSNPGEFPL AETPSIVLII LTNCDLEPRD LANLEASIIA TCTFFRKPSN FAPEVQLSIT
101: ELAALDMCQE RAIFKPMNSE EKELLKQRCG GSWKLVLRYI LAGEICCRRE KSQAIAGPSH SIAVTSSGSV YSFGSNSSGQ LGHGTLEEEW RPRLIRSLQG
201: IRIIQAAAGA GRTMLISDAG QVYAFGKESF GEAEHTIEGS KVVTTPRLVK SLKDIYVVQA AIGNFFSAVL SREGRVYTFC WGNESKLGHR TEPSDLEPHP
301: LLGPLENIPV VQIAAGYCYL LALACQPSGM SVYSVGCGLG GKLGHGSMTD EKYPRLIEHF QTLNLQPRVV AAGAWHAAVV GQDGRTCTWG WGRYGCLGHG
401: NEESESVPKV VESLDNIKAV HVATGDYTTF VVSDTGDVYS FGYGESSSLG HSSVIDGQGN RHANVLSPKL VTSLKNINER VVQISLTNSV YWNAHTFALT
501: DSGKLYAFGA GDKGQLGTEL PAQQTERAMP EQVNINLS

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.