Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016865 | Potato | cytosol, extracellular, plastid | 35.87 | 46.24 |
| HORVU5Hr1G034530.6 | Barley | cytosol | 80.27 | 33.52 |
| Os12t0284000-01 | Rice | cytosol | 74.44 | 31.09 |
| PGSC0003DMT400027900 | Potato | cytosol | 71.3 | 29.83 |
| KRG97505 | Soybean | cytosol | 71.3 | 29.72 |
| Solyc05g014030.2.1 | Tomato | cytosol | 70.85 | 29.64 |
| VIT_01s0137g00230.t01 | Wine grape | cytosol | 70.4 | 29.4 |
| CDY04192 | Canola | cytosol | 64.57 | 29.27 |
| KRH31377 | Soybean | cytosol | 69.51 | 29.19 |
| CDY39172 | Canola | cytosol | 64.13 | 29.07 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 68.61 | 28.49 |
| Bra017335.1-P | Field mustard | cytosol | 67.71 | 28.44 |
| CDX99731 | Canola | cytosol, plastid | 67.71 | 28.22 |
| AT3G26100.5 | Thale cress | cytosol, plastid | 67.26 | 28.2 |
| CDX83586 | Canola | cytosol, plastid | 66.82 | 28.17 |
| Bra025182.1-P | Field mustard | cytosol | 66.82 | 28.17 |
| CDY13609 | Canola | cytosol | 66.82 | 28.17 |
| GSMUA_Achr9P02110_001 | Banana | plastid | 66.37 | 27.51 |
| Bra036349.1-P | Field mustard | cytosol, plastid | 65.92 | 26.78 |
| CDY40988 | Canola | cytosol, plastid | 65.92 | 26.78 |
| KRH59226 | Soybean | cytosol | 61.44 | 25.66 |
| TraesCS2D01G340500.1 | Wheat | cytosol | 27.8 | 14.16 |
| TraesCS2D01G241400.2 | Wheat | cytosol | 26.91 | 12.4 |
| TraesCS6D01G142500.1 | Wheat | golgi | 23.32 | 11.82 |
| TraesCS7D01G282600.1 | Wheat | cytosol | 19.73 | 11.67 |
| TraesCS2D01G304900.2 | Wheat | cytosol | 22.87 | 11.51 |
| TraesCS1D01G078800.1 | Wheat | mitochondrion | 21.52 | 11.46 |
| TraesCS3D01G312300.1 | Wheat | cytosol | 17.94 | 9.83 |
| TraesCS5D01G177900.1 | Wheat | cytosol | 21.08 | 9.79 |
| TraesCS5D01G373300.1 | Wheat | mitochondrion | 14.35 | 7.31 |
| TraesCS3D01G522600.2 | Wheat | cytosol | 24.22 | 6.21 |
| TraesCS1D01G019900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 22.87 | 5.61 |
| TraesCS1D01G372300.1 | Wheat | cytosol | 26.46 | 5.6 |
| TraesCS1D01G240700.1 | Wheat | cytosol | 26.91 | 5.49 |
| TraesCS7D01G187100.3 | Wheat | cytosol | 24.66 | 5.39 |
| TraesCS2D01G457000.1 | Wheat | cytosol, nucleus, peroxisome | 24.22 | 5.28 |
| TraesCS3D01G489600.1 | Wheat | cytosol | 25.56 | 5.23 |
| TraesCS2D01G589800.1 | Wheat | cytosol | 24.66 | 5.14 |
| TraesCS6D01G241800.1 | Wheat | cytosol | 22.42 | 4.71 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G123500.1 | EnsemblPlantsGene:TraesCS5D01G123500 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF24 | PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 |
| SEG:seg | SUPFAM:SSF50985 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:181886805..181889303
Molecular Weight (calculated)
24429.9 Da
IEP (calculated)
8.190
GRAVY (calculated)
-0.303
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MCDQVLRGKP WNKYIQRTRQ RDVSSRFPLC FPSCVRRFNG GSVYSVGCAL GGKLGHGTRT DEKYPRLIEQ FRTLNIQPIV VAASAWYAVV VGKDGRVCTW
101: GWGRYGCLGH GNEECEYVPK VVEALSSVKA VYVATGDYST FIVSRKGDVY SFGCGESSSL GHNTTIEANV LSPDQVTSLQ SMNEKVSGKF YAFGAGDKGQ
201: LGSELVAQES ERGTPERVEI DLS
101: GWGRYGCLGH GNEECEYVPK VVEALSSVKA VYVATGDYST FIVSRKGDVY SFGCGESSSL GHNTTIEANV LSPDQVTSLQ SMNEKVSGKF YAFGAGDKGQ
201: LGSELVAQES ERGTPERVEI DLS
001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.