Factsheet for TraesCS1D01G078800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G076400.1	Wheat	mitochondrion	97.85	97.85
HORVU1Hr1G016430.4	Barley	cytosol	91.65	96.73
EES09892	Sorghum	mitochondrion	81.62	81.82
Os11t0545800-01	Rice	mitochondrion	82.58	81.41
Zm00001d052624_P007	Maize	plastid	75.66	69.21
GSMUA_Achr10P...	Banana	mitochondrion	63.96	63.81
KRH63955	Soybean	mitochondrion	56.8	57.07
VIT_07s0031g02850.t01	Wine grape	mitochondrion	56.56	56.43
KRH53977	Soybean	cytosol, mitochondrion, nucleus	42.96	56.25
CDY44785	Canola	mitochondrion	56.09	54.27
AT5G08710.1	Thale cress	mitochondrion	56.09	54.15
Bra028647.1-P	Field mustard	mitochondrion	56.09	53.78
CDY40735	Canola	mitochondrion	56.09	53.78
Solyc05g056590.2.1	Tomato	cytosol	33.89	51.64
TraesCS3D01G312300.1	Wheat	cytosol	25.78	26.54
TraesCS7D01G282600.1	Wheat	cytosol	23.15	25.73
TraesCS2D01G304900.2	Wheat	cytosol	26.01	24.61
TraesCS6D01G142500.1	Wheat	golgi	24.82	23.64
TraesCS5D01G177900.1	Wheat	cytosol	25.3	22.08
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	11.46	21.52
TraesCS5D01G373300.1	Wheat	mitochondrion	20.05	19.18
TraesCS2D01G241400.2	Wheat	cytosol	21.48	18.59
TraesCS2D01G340500.1	Wheat	cytosol	17.66	16.89
TraesCS3D01G522600.2	Wheat	cytosol	25.54	12.31
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	25.78	11.88
TraesCS3D01G489600.1	Wheat	cytosol	30.31	11.66
TraesCS1D01G240700.1	Wheat	cytosol	30.31	11.62
TraesCS7D01G187100.3	Wheat	cytosol	27.68	11.36
TraesCS1D01G372300.1	Wheat	cytosol	28.16	11.21
TraesCS2D01G457000.1	Wheat	cytosol, nucleus, peroxisome	26.49	10.85
TraesCS2D01G589800.1	Wheat	cytosol	26.01	10.19
TraesCS6D01G241800.1	Wheat	cytosol	25.06	9.9

Protein Annotations

EnsemblPlants:TraesCS1D01G078800.1	EnsemblPlantsGene:TraesCS1D01G078800	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF245	PFAM:PF00415	PFAM:PF13540	PFscan:PS50012
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	MapMan:35.1	:

Description

No Description!

Coordinates

chr1D:-:60404582..60412515

Molecular Weight (calculated)

44578.6 Da

IEP (calculated)

7.075

GRAVY (calculated)

-0.216

Length

419 amino acids

Sequence
(BLAST)

001: MWRARRWPRP RWFSSDTAAV GADSGNPARR RVAALWGNGD HGRLGLGALE SRWSPTACPF FLTRPADPPT SLACGGAHTL FLTEGGRVFA TGLNDFGQLG
101: IGSSMPHTLD PVEVSGFHEK VVQISAGNHH SCAVTADGEL FVWGKNSSGQ LGLGKSAGKV VSTPRKVDYL ADVRVKMTAL GSEHSIVVTE DGEALSWGAA
201: GAGRLGHGHK SSFLGFAMTS NEYTPRLIKN LDGIKIKRIA AGMLHSACID EKGTVFMFGQ KTEKVLGRSN DAPRPSAVEE IQFSEEVACG GYHTCAVTDR
301: GDLYSWGSNE NGCLGLGGTG MVRFPEVVRS SLFKLPVSKV SCGWKHTAAI SGEDIYTWGW GGANGTFFEE GHSSGGQLGH GNDVDYCEPM MVELGKNASA
401: VHVSCGFNHT GAILEYVEN

Best Arabidopsis Sequence Match ( AT5G08710.1 )
(BLAST)

001: MLTRAIGRVR IPVSRIQGSN CTSGLLKDSK LGPIGVCCSR WVSSESGKRF AAMWGSGDYG RLGLGNLDSQ WTPAVCSALS DHSITAVACG GAHTLFLTET
101: RRVFATGLND CGQLGVSDVK SHAMDPLEVS GLDKDILHIS AGYYHSAAIT VDGELYMWGK NSSGQLGLGK KAARVVRVPT KVEALHGITI QSVALGSEHS
201: VAVTDGGEVL SWGGGGSGRL GHGHQSSLFG ILRSNSEFTP RLIKELEGIK VTNVAAGLLH SACTDENGSA FMFGEKSINK MGFGGVRNAT TPSIISEVPY
301: AEEVACGGYH TCVVTRGGEL YTWGSNENGC LGTDSTYVSH SPVRVEGPFL ESTVSQVSCG WKHTAAISDN NVFTWGWGGS HGTFSVDGHS SGGQLGHGSD
401: VDYARPAMVD LGKNVRAVHI SCGFNHTAAV LEHF

Arabidopsis Description

RUG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.