Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- plastid 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G024400.1 | Wheat | cytosol, mitochondrion, nucleus | 97.8 | 98.02 |
| TraesCS1A01G020400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 97.8 | 98.02 |
| HORVU1Hr1G002740.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 96.15 | 96.36 |
| EES18851 | Sorghum | cytosol, plastid | 84.27 | 83.62 |
| Zm00001d035723_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 83.28 | 82.55 |
| Os05t0106700-00 | Rice | mitochondrion | 85.26 | 82.45 |
| TraesCS3D01G522600.2 | Wheat | cytosol | 71.73 | 75.03 |
| KRH08736 | Soybean | endoplasmic reticulum | 45.87 | 59.83 |
| GSMUA_Achr6P13030_001 | Banana | endoplasmic reticulum | 59.08 | 54.85 |
| CDY48550 | Canola | cytosol | 58.2 | 53.98 |
| VIT_18s0166g00210.t01 | Wine grape | cytosol | 65.57 | 52.79 |
| KRG91629 | Soybean | cytosol | 63.37 | 52.46 |
| KRH30227 | Soybean | cytosol | 25.85 | 52.11 |
| KRH35179 | Soybean | cytosol | 64.14 | 52.05 |
| GSMUA_Achr2P20470_001 | Banana | endoplasmic reticulum, plasma membrane | 55.67 | 51.27 |
| AT5G42140.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 60.62 | 51.11 |
| KRH70333 | Soybean | cytosol | 62.82 | 50.98 |
| Solyc04g071040.2.1 | Tomato | cytosol | 63.15 | 50.98 |
| PGSC0003DMT400002081 | Potato | cytosol | 63.15 | 50.98 |
| CDY47138 | Canola | cytosol | 58.42 | 50.72 |
| Bra016214.1-P | Field mustard | cytosol | 58.09 | 50.29 |
| CDY11586 | Canola | cytosol | 58.09 | 50.14 |
| AT1G76950.1 | Thale cress | cytosol | 60.4 | 49.77 |
| Bra003698.1-P | Field mustard | mitochondrion | 58.86 | 49.67 |
| KRH08750 | Soybean | cytosol | 34.76 | 49.61 |
| CDX87557 | Canola | cytosol | 57.87 | 49.02 |
| Bra015708.1-P | Field mustard | cytosol | 57.87 | 48.98 |
| CDX88324 | Canola | cytosol | 56.99 | 48.82 |
| KRH30228 | Soybean | cytosol | 20.79 | 46.44 |
| TraesCS2D01G589800.1 | Wheat | cytosol | 54.24 | 46.07 |
| CDX68076 | Canola | cytosol | 39.71 | 43.49 |
| TraesCS1D01G240700.1 | Wheat | cytosol | 47.63 | 39.62 |
| TraesCS1D01G372300.1 | Wheat | cytosol | 45.76 | 39.51 |
| TraesCS3D01G489600.1 | Wheat | cytosol | 46.75 | 39.03 |
| TraesCS7D01G187100.3 | Wheat | cytosol | 38.94 | 34.67 |
| TraesCS2D01G304900.2 | Wheat | cytosol | 15.07 | 30.93 |
| TraesCS6D01G142500.1 | Wheat | golgi | 14.96 | 30.91 |
| TraesCS2D01G457000.1 | Wheat | cytosol, nucleus, peroxisome | 33.55 | 29.81 |
| CDY70949 | Canola | cytosol | 11.44 | 29.38 |
| TraesCS7D01G282600.1 | Wheat | cytosol | 12.1 | 29.18 |
| TraesCS6D01G241800.1 | Wheat | cytosol | 33.44 | 28.65 |
| TraesCS5D01G373300.1 | Wheat | mitochondrion | 12.76 | 26.48 |
| TraesCS1D01G078800.1 | Wheat | mitochondrion | 11.88 | 25.78 |
| TraesCS5D01G177900.1 | Wheat | cytosol | 12.87 | 24.38 |
| TraesCS3D01G312300.1 | Wheat | cytosol | 10.67 | 23.83 |
| TraesCS2D01G241400.2 | Wheat | cytosol | 12.21 | 22.93 |
| TraesCS5D01G123500.1 | Wheat | mitochondrion, plastid | 5.61 | 22.87 |
| TraesCS2D01G340500.1 | Wheat | cytosol | 8.47 | 17.58 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:BRX_N | InterPro:Brevis_radix_dom | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:IPR013083 |
| InterPro:IPR013591 | InterPro:IPR017455 | PFAM:PF00415 | PFAM:PF01363 | PFAM:PF08381 | PFAM:PF13713 |
| PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 |
| PANTHER:PTHR22870:SF199 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50985 | SUPFAM:SSF57903 |
| EnsemblPlantsGene:TraesCS1D01G019900 | EnsemblPlants:TraesCS1D01G019900.1 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd00065 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:8623031..8626761
Molecular Weight (calculated)
98619.7 Da
IEP (calculated)
8.456
GRAVY (calculated)
-0.457
Length
909 amino acids
Sequence
(BLAST)
(BLAST)
001: MYTKGPPLDV LRASISSAPS TSSHGSAQDD CDSLGDVYVW GEVVCDNSAR TSSDTVVRST GKTDFLLPKP LESNLVLDVY HVDCGVRHAS LVTRNGEVFT
101: WGEDSGGRLG HGTREDSVHP RLVESLAACN IDFVACGEFH TCAVTTTGEL YTWGDGTHNV GLLGHGTDVG HWIPRRISGP LEGLQIAYVS CGTWHTALIT
201: SMGQLFTFGD GSFGVLGHGD LKSISCPREV ESLSGLKTIA VACGVWHTAA IVEVIVTQSS ATVSAGKLFT WGDGDKHRLG HGDKEARLKP TCVASLIDYD
301: FYRVACGHSL TVGLTTSGKV WTMGNSVYGQ LGNLNSDGRP CLVEDKIASE HVLQIACGSY HVAVLTSRSE VFTWGKGANG RLGHGDIEDR KVPTPVEALR
401: DRAVRHIACG ANFTAAICLH KWVSGADQSQ CSSCRQPFGF TRKRHNCYNC GLVHCNACTS RKALRAALAP NPGKLHRVCD SCYSKLKNAS TSSASNKKDL
501: APGETNGEAR VGRSVLSSNM DMIRSLDSKA AKQGKKTDAL SFLRNPQVSS LLQLRDIAFS GAVDLNRPAV PRAARTPAAR SVTSSRAVSP FSRRSSPPRS
601: TTPVPTTHGL SLSKSATDNL VKANELLSQE VERLRAQVDS LRNRCDHHEL ELHKSAKKVQ EAMTLVAEES AKSKAAKEVI KSLTAQLKDM AERLPPEHGA
701: YDFNEAKQVH VPNGIEPHVA TYSSMNGKVH QARNELLNAP SPNSGRSPHL NGGISNQHKL LGNISENSEG STHSLRITSP HGSDRPHRRA HSNSDEMLSV
801: SSRADDNVSI DARSLQNGED GYKPRGTISI SSNQVQAEWI EQYEPGVYIT LTTLRDGTRD LKRVRFSRRR FGEHQAENWW NENREKVYEK YNVRSSERVS
901: SAASTRSAY
101: WGEDSGGRLG HGTREDSVHP RLVESLAACN IDFVACGEFH TCAVTTTGEL YTWGDGTHNV GLLGHGTDVG HWIPRRISGP LEGLQIAYVS CGTWHTALIT
201: SMGQLFTFGD GSFGVLGHGD LKSISCPREV ESLSGLKTIA VACGVWHTAA IVEVIVTQSS ATVSAGKLFT WGDGDKHRLG HGDKEARLKP TCVASLIDYD
301: FYRVACGHSL TVGLTTSGKV WTMGNSVYGQ LGNLNSDGRP CLVEDKIASE HVLQIACGSY HVAVLTSRSE VFTWGKGANG RLGHGDIEDR KVPTPVEALR
401: DRAVRHIACG ANFTAAICLH KWVSGADQSQ CSSCRQPFGF TRKRHNCYNC GLVHCNACTS RKALRAALAP NPGKLHRVCD SCYSKLKNAS TSSASNKKDL
501: APGETNGEAR VGRSVLSSNM DMIRSLDSKA AKQGKKTDAL SFLRNPQVSS LLQLRDIAFS GAVDLNRPAV PRAARTPAAR SVTSSRAVSP FSRRSSPPRS
601: TTPVPTTHGL SLSKSATDNL VKANELLSQE VERLRAQVDS LRNRCDHHEL ELHKSAKKVQ EAMTLVAEES AKSKAAKEVI KSLTAQLKDM AERLPPEHGA
701: YDFNEAKQVH VPNGIEPHVA TYSSMNGKVH QARNELLNAP SPNSGRSPHL NGGISNQHKL LGNISENSEG STHSLRITSP HGSDRPHRRA HSNSDEMLSV
801: SSRADDNVSI DARSLQNGED GYKPRGTISI SSNQVQAEWI EQYEPGVYIT LTTLRDGTRD LKRVRFSRRR FGEHQAENWW NENREKVYEK YNVRSSERVS
901: SAASTRSAY
0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [cytosol,endoplasmic reticulum,plastid]
SUBAcon: [cytosol,endoplasmic reticulum,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.