Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G384600.1 | Wheat | cytosol | 97.53 | 97.9 |
| TraesCS1A01G366800.1 | Wheat | cytosol | 96.11 | 96.93 |
| HORVU1Hr1G078890.1 | Barley | cytosol | 95.63 | 95.81 |
| Os05t0545200-00 | Rice | cytosol | 74.74 | 77.61 |
| EES19890 | Sorghum | cytosol | 74.45 | 76.86 |
| Zm00001d038882_P002 | Maize | cytosol | 73.98 | 73.84 |
| CDY66504 | Canola | cytosol | 46.44 | 59.27 |
| VIT_05s0049g01140.t01 | Wine grape | cytosol | 56.22 | 55.8 |
| CDX85076 | Canola | cytosol | 52.33 | 53.08 |
| CDY12764 | Canola | cytosol | 52.71 | 52.96 |
| PGSC0003DMT400034994 | Potato | cytosol | 51.95 | 52.85 |
| Solyc03g005590.1.1 | Tomato | cytosol, plastid | 53.66 | 52.75 |
| AT3G23270.2 | Thale cress | cytosol | 52.23 | 52.18 |
| Bra023740.1-P | Field mustard | cytosol | 52.14 | 51.5 |
| KRH31700 | Soybean | cytosol | 52.33 | 51.11 |
| KRH69117 | Soybean | cytosol | 52.33 | 51.11 |
| KRH00393 | Soybean | cytosol | 51.28 | 50.51 |
| CDY49416 | Canola | cytosol | 52.71 | 49.6 |
| AT4G14368.1 | Thale cress | cytosol | 52.04 | 49.55 |
| CDX77534 | Canola | cytosol | 52.14 | 49.41 |
| KRH40796 | Soybean | cytosol | 34.95 | 49.07 |
| TraesCS1D01G019900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 39.51 | 45.76 |
| TraesCS3D01G522600.2 | Wheat | cytosol | 37.61 | 45.57 |
| TraesCS2D01G589800.1 | Wheat | cytosol | 46.25 | 45.51 |
| TraesCS3D01G489600.1 | Wheat | cytosol | 43.59 | 42.15 |
| Bra014931.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 50.24 | 41.65 |
| TraesCS1D01G240700.1 | Wheat | cytosol | 43.21 | 41.63 |
| TraesCS7D01G187100.3 | Wheat | cytosol | 38.65 | 39.86 |
| KRH65503 | Soybean | cytosol, mitochondrion, nucleus | 39.51 | 39.77 |
| TraesCS2D01G457000.1 | Wheat | cytosol, nucleus, peroxisome | 32.67 | 33.63 |
| TraesCS6D01G241800.1 | Wheat | cytosol | 32.76 | 32.52 |
| TraesCS6D01G142500.1 | Wheat | golgi | 12.92 | 30.91 |
| TraesCS2D01G304900.2 | Wheat | cytosol | 12.82 | 30.47 |
| TraesCS1D01G078800.1 | Wheat | mitochondrion | 11.21 | 28.16 |
| TraesCS7D01G282600.1 | Wheat | cytosol | 9.97 | 27.85 |
| TraesCS5D01G373300.1 | Wheat | mitochondrion | 11.4 | 27.4 |
| TraesCS5D01G123500.1 | Wheat | mitochondrion, plastid | 5.6 | 26.46 |
| TraesCS3D01G312300.1 | Wheat | cytosol | 9.88 | 25.55 |
| TraesCS2D01G241400.2 | Wheat | cytosol | 11.68 | 25.41 |
| TraesCS5D01G177900.1 | Wheat | cytosol | 10.26 | 22.5 |
| TraesCS2D01G340500.1 | Wheat | cytosol | 8.83 | 21.23 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:Brevis_radix_dom | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:IPR011993 |
| InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 | PFAM:PF00415 | PFAM:PF01363 | PFAM:PF08381 |
| InterPro:PH-like_dom_sf | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | PFscan:PS50178 | PFscan:PS51514 |
| PANTHER:PTHR22870 | PANTHER:PTHR22870:SF238 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50729 |
| SUPFAM:SSF50985 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS1D01G372300 | EnsemblPlants:TraesCS1D01G372300.1 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | TIGR:cd00065 | TIGR:cd13365 | SEG:seg | : |
Description
No Description!
Coordinates
chr1D:-:450224925..450231602
Molecular Weight (calculated)
114481.0 Da
IEP (calculated)
8.498
GRAVY (calculated)
-0.434
Length
1053 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTPDDNALIT LKKGSKLIKY SRKGKPKIRE FRLSSDETAL VWYSHSKEKC LRLSSVSKII PGQRTAVFRR FLRPEKDYLS FSLIYKNGQR SLDLVCKDQA
0101: EVEVWFSTLE TLITSYRVNF PTDCQSDRTS FSDEVSQYQD AYDARLDIAS SINRTYYSAG YGSAYSLNSS RADVRSDRAN MLRVSTGDSS RISISSSIPS
0201: SSSQGSGPDD IESLGDVYVW GEVWTDVLPP EGSSNFLCSK TDVLIPKPLE SDVVLDVQQI SCGSRHIALT TRQGEVFTWG EELGGRLGHG TDEDISRPEL
0301: VESLAVSNVE YIACGEFHTC AVTASGDLYN WGDGSYNAGL LGHGLGASHW LPKRVSGPLE GLQVLSVACG SWHSALAMSS GKVFTFGDGT FGALGHGNRD
0401: SVSYPKEVES LSGFRTMKVA CGIWHSAAIV ETNSQTGMNV VSRKLFTWGD GDKNRLGHGD KEARLVPTVV QALVDNNFHQ VACGHSMTVA LATSGHVFTM
0501: GSSSNGQLGN PKADGKLPCQ VQDKLNSELV EEISCGSNHV AVLTSRSEVY TWGMGANGRL GHGGIEDKKK PTIVDALKDR HVKSIACGSN FTTCICIHKW
0601: VSGADQSVCS GCRQPFGFTR KRHNCYNCGL VHCHACSSRK VLKAALAPTP GKPHRVCDSC FMKLKAADSG GTNSPFNNKK SVMTRRSVDI KDKSERPDIR
0701: PSRLATAATA EPVKYADSKS VRSEIKPDPV SNARAPQGPA TALAVPTTFV KPMGMGGMGG MGGMGGMGGM GGMGAMGGMG MGMGMGVNMA PMGMGMPVVS
0801: QSHKKPSPAP AMASALSVKS DTKDIDNLKK TNETLNQDIS KLQTQVNKLK QKCEVQDEQL QKSERRAKSA ASLAAEESSR RNSMLFIRFL DTELKGLVDK
0901: VPAEFSDSIK DLQSQSEKYL TGQCSHSPEA ISGHEQPRLP IGGMHEITHH GRSASMVNLD GSSLTSESPC HRFMDSNGRA PGDFAPKYGT HGEVQLIEQF
1001: EPGVYVTLIQ LRDGTKVFKR VRFSKRRFAE QQAEEWWREN QERVFRKYNH APT
0101: EVEVWFSTLE TLITSYRVNF PTDCQSDRTS FSDEVSQYQD AYDARLDIAS SINRTYYSAG YGSAYSLNSS RADVRSDRAN MLRVSTGDSS RISISSSIPS
0201: SSSQGSGPDD IESLGDVYVW GEVWTDVLPP EGSSNFLCSK TDVLIPKPLE SDVVLDVQQI SCGSRHIALT TRQGEVFTWG EELGGRLGHG TDEDISRPEL
0301: VESLAVSNVE YIACGEFHTC AVTASGDLYN WGDGSYNAGL LGHGLGASHW LPKRVSGPLE GLQVLSVACG SWHSALAMSS GKVFTFGDGT FGALGHGNRD
0401: SVSYPKEVES LSGFRTMKVA CGIWHSAAIV ETNSQTGMNV VSRKLFTWGD GDKNRLGHGD KEARLVPTVV QALVDNNFHQ VACGHSMTVA LATSGHVFTM
0501: GSSSNGQLGN PKADGKLPCQ VQDKLNSELV EEISCGSNHV AVLTSRSEVY TWGMGANGRL GHGGIEDKKK PTIVDALKDR HVKSIACGSN FTTCICIHKW
0601: VSGADQSVCS GCRQPFGFTR KRHNCYNCGL VHCHACSSRK VLKAALAPTP GKPHRVCDSC FMKLKAADSG GTNSPFNNKK SVMTRRSVDI KDKSERPDIR
0701: PSRLATAATA EPVKYADSKS VRSEIKPDPV SNARAPQGPA TALAVPTTFV KPMGMGGMGG MGGMGGMGGM GGMGAMGGMG MGMGMGVNMA PMGMGMPVVS
0801: QSHKKPSPAP AMASALSVKS DTKDIDNLKK TNETLNQDIS KLQTQVNKLK QKCEVQDEQL QKSERRAKSA ASLAAEESSR RNSMLFIRFL DTELKGLVDK
0901: VPAEFSDSIK DLQSQSEKYL TGQCSHSPEA ISGHEQPRLP IGGMHEITHH GRSASMVNLD GSSLTSESPC HRFMDSNGRA PGDFAPKYGT HGEVQLIEQF
1001: EPGVYVTLIQ LRDGTKVFKR VRFSKRRFAE QQAEEWWREN QERVFRKYNH APT
0001: MKTDGMADPS SYVNHDRDID QALVSLKKGT QLLKYSRKGR PKFRSFRLSP DETTLFWLSH GEEKGLKLAT VSRILPGQRT AVFRRYLRPE KDYLSFSLIY
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEIHDSDCFS TGRPSTASID FAPNNTRRGR TSIDLGIQNS PTKFGSSDVG YERGNMLRPS
0201: TDGFRISVSS TPSCSTGTSG PDDIESLGDV YVWGEVWSDG ISPDGVVNST TVKIDVLIPK PLESNVVLDV HQIACGVRHI ALVTRQGEVF TWEEEAGGRL
0301: GHGIQVDVCR PKLVEFLALT NIDFVACGEY HTCAVSTSGD LFTWGDGIHN VGLLGHGSDL SHWIPKRVSG PVEGLQVLSV ACGTWHSALA TANGKLFTFG
0401: DGAFGVLGHG DRESVSYPKE VKMLSGLKTL KVACGVWHTV AIVEVMNQTG TSTSSRKLFT WGDGDKNRLG HGNKETYLLP TCVSSLIDYN FNQIACGHTF
0501: TVALTTSGHV FTMGGTSHGQ LGSSNSDGKL PCLVQDRLVG EFVEEISCGD HHVAVLTSRS EVFTWGKGSN GRLGHGDKDD RKTPTLVEAL RERHVKSISC
0601: GSNFTSSICI HKWVSGADQS VCSGCRQAFG FTRKRHNCYN CGLVHCHACS SKKALKAALA PTPGKPHRVC DACYTKLKAG ESGYNSNVAN RNSTTPTRSL
0701: DGTGRPDRDI RSSRILLSPK TEPVKYSEVR SSRSESSIVR ASQVPALQQL RDVAFPSSLS AIQNAFKPVA SSSTSTLPSG TRSSRISSPP RSSGFSRGMI
0801: DTLKKSNGVI NKEMTKLQSQ IKNLKEKCDN QGTEIQRLKK TAREASDLAV KHSSKHKAAT EVMKSVAEHL RELKEKLPPE VSRCEAFESM NSQAEAYLNA
0901: SEASESCLPT TSLGMGQRDP TPSTNTQDQN IEEKQSSNGG NMRSQEPSGT TEASSSSKGG GKELIEQFEP GVYVTYVLHK NGGKIFRRVR FSKRRFDEHQ
1001: AEEWWNSKKD RLLKRYSHHA SSSSPTASDS VPTPTQPQPP ASDSVPTPTQ PQPPASDSVP TPTQPQPPAS PTQPNSDQAE DSKEVLDES
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEIHDSDCFS TGRPSTASID FAPNNTRRGR TSIDLGIQNS PTKFGSSDVG YERGNMLRPS
0201: TDGFRISVSS TPSCSTGTSG PDDIESLGDV YVWGEVWSDG ISPDGVVNST TVKIDVLIPK PLESNVVLDV HQIACGVRHI ALVTRQGEVF TWEEEAGGRL
0301: GHGIQVDVCR PKLVEFLALT NIDFVACGEY HTCAVSTSGD LFTWGDGIHN VGLLGHGSDL SHWIPKRVSG PVEGLQVLSV ACGTWHSALA TANGKLFTFG
0401: DGAFGVLGHG DRESVSYPKE VKMLSGLKTL KVACGVWHTV AIVEVMNQTG TSTSSRKLFT WGDGDKNRLG HGNKETYLLP TCVSSLIDYN FNQIACGHTF
0501: TVALTTSGHV FTMGGTSHGQ LGSSNSDGKL PCLVQDRLVG EFVEEISCGD HHVAVLTSRS EVFTWGKGSN GRLGHGDKDD RKTPTLVEAL RERHVKSISC
0601: GSNFTSSICI HKWVSGADQS VCSGCRQAFG FTRKRHNCYN CGLVHCHACS SKKALKAALA PTPGKPHRVC DACYTKLKAG ESGYNSNVAN RNSTTPTRSL
0701: DGTGRPDRDI RSSRILLSPK TEPVKYSEVR SSRSESSIVR ASQVPALQQL RDVAFPSSLS AIQNAFKPVA SSSTSTLPSG TRSSRISSPP RSSGFSRGMI
0801: DTLKKSNGVI NKEMTKLQSQ IKNLKEKCDN QGTEIQRLKK TAREASDLAV KHSSKHKAAT EVMKSVAEHL RELKEKLPPE VSRCEAFESM NSQAEAYLNA
0901: SEASESCLPT TSLGMGQRDP TPSTNTQDQN IEEKQSSNGG NMRSQEPSGT TEASSSSKGG GKELIEQFEP GVYVTYVLHK NGGKIFRRVR FSKRRFDEHQ
1001: AEEWWNSKKD RLLKRYSHHA SSSSPTASDS VPTPTQPQPP ASDSVPTPTQ PQPPASDSVP TPTQPQPPAS PTQPNSDQAE DSKEVLDES
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:F4JVE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.