Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G200200.1 | Wheat | cytosol | 98.94 | 95.89 |
| TraesCS7A01G284800.1 | Wheat | cytosol | 99.2 | 93.73 |
| HORVU7Hr1G062090.6 | Barley | cytosol | 97.61 | 88.89 |
| Zm00001d050380_P004 | Maize | cytosol | 87.0 | 84.32 |
| KXG25196 | Sorghum | cytosol | 85.41 | 82.35 |
| GSMUA_Achr9P15560_001 | Banana | cytosol | 78.78 | 79.84 |
| Zm00001d032229_P002 | Maize | mitochondrion | 85.15 | 76.61 |
| KRG93861 | Soybean | nucleus | 79.31 | 75.7 |
| PGSC0003DMT400032945 | Potato | extracellular | 77.98 | 75.19 |
| VIT_14s0006g03240.t01 | Wine grape | cytosol | 78.78 | 75.19 |
| Solyc02g085780.2.1 | Tomato | cytosol | 77.45 | 74.87 |
| CDY34733 | Canola | cytosol | 66.05 | 74.33 |
| Bra008654.1-P | Field mustard | cytosol | 77.19 | 73.3 |
| CDX69479 | Canola | cytosol | 76.66 | 72.8 |
| AT5G16040.1 | Thale cress | cytosol | 76.13 | 72.47 |
| CDY26488 | Canola | cytosol | 76.39 | 72.36 |
| AT3G02510.1 | Thale cress | cytosol | 75.33 | 72.26 |
| Bra021435.1-P | Field mustard | cytosol | 74.27 | 71.43 |
| TraesCS3D01G312300.1 | Wheat | cytosol | 26.26 | 24.32 |
| TraesCS6D01G142500.1 | Wheat | golgi | 27.85 | 23.86 |
| TraesCS1D01G078800.1 | Wheat | mitochondrion | 25.73 | 23.15 |
| TraesCS2D01G304900.2 | Wheat | cytosol | 26.53 | 22.57 |
| TraesCS5D01G373300.1 | Wheat | mitochondrion | 23.87 | 20.55 |
| TraesCS5D01G123500.1 | Wheat | mitochondrion, plastid | 11.67 | 19.73 |
| TraesCS2D01G241400.2 | Wheat | cytosol | 24.4 | 19.01 |
| TraesCS5D01G177900.1 | Wheat | cytosol | 24.14 | 18.96 |
| TraesCS2D01G340500.1 | Wheat | cytosol | 17.51 | 15.07 |
| TraesCS1D01G019900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 29.18 | 12.1 |
| TraesCS3D01G522600.2 | Wheat | cytosol | 27.85 | 12.08 |
| TraesCS7D01G187100.3 | Wheat | cytosol | 27.59 | 10.19 |
| TraesCS1D01G372300.1 | Wheat | cytosol | 27.85 | 9.97 |
| TraesCS1D01G240700.1 | Wheat | cytosol | 28.65 | 9.88 |
| TraesCS3D01G489600.1 | Wheat | cytosol | 28.12 | 9.73 |
| TraesCS2D01G589800.1 | Wheat | cytosol | 26.53 | 9.35 |
| TraesCS2D01G457000.1 | Wheat | cytosol, nucleus, peroxisome | 24.67 | 9.09 |
| TraesCS6D01G241800.1 | Wheat | cytosol | 22.55 | 8.01 |
| Os09t0560500-01 | Rice | mitochondrion, plastid | 0.0 | 0.0 |
| Os02t0684900-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G282600.1 | EnsemblPlantsGene:TraesCS7D01G282600 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF206 | PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 |
| ScanProsite:PS00626 | SEG:seg | SUPFAM:SSF50985 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr7D:-:288464430..288478687
Molecular Weight (calculated)
40327.6 Da
IEP (calculated)
6.317
GRAVY (calculated)
-0.294
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSGEDGQLG MGRCDEKDWA RCIGALDAYA VSAVVAGSRN SLAICDDGSL FTWGWNQRGT LGHPPETKTE SSPAHVDALI GVKIVQAAIG GWHCLAVDDK
101: GRAYAWGGNE YGQCGEEPER KEDGTRALRR DIPIPQRCAL KLKVRQVAAG GTHSVVLTQE GHVWTWGQPW PPGDIKKIST PVRVQGLEQV SMIAVGAFHN
201: LALSVDGILW AWGNNEYGQL GIGDTQPRSQ PIRVEGLSNL SLVDIAAGGW HSAALTKEGE VYAWGRGEHG RLGFGDDKSS HMVPLKVQLL AGEDIVQVSC
301: GGTHSVVLTS DGRIFSYGRG DHGRLGDGRE VTTGHPMEVP INLPPPKTST SSEGLWQANY VACGGRHTLA IVTWTDM
101: GRAYAWGGNE YGQCGEEPER KEDGTRALRR DIPIPQRCAL KLKVRQVAAG GTHSVVLTQE GHVWTWGQPW PPGDIKKIST PVRVQGLEQV SMIAVGAFHN
201: LALSVDGILW AWGNNEYGQL GIGDTQPRSQ PIRVEGLSNL SLVDIAAGGW HSAALTKEGE VYAWGRGEHG RLGFGDDKSS HMVPLKVQLL AGEDIVQVSC
301: GGTHSVVLTS DGRIFSYGRG DHGRLGDGRE VTTGHPMEVP INLPPPKTST SSEGLWQANY VACGGRHTLA IVTWTDM
001: MASATSVIAW GSGEDGQLGL GTDEEKELAS VVDALEPFNV RSVVGGSRNS LAICDDGKLF TWGWNQRGTL GHPPETKTES TPSLVKSLAN VKIVQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE
Arabidopsis Description
At5g16040 [Source:UniProtKB/TrEMBL;Acc:Q9LFS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.