Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G282600.1 | Wheat | cytosol | 84.32 | 87.0 |
| TraesCS7B01G200200.1 | Wheat | cytosol | 86.89 | 86.89 |
| Zm00001d032229_P002 | Maize | mitochondrion | 92.03 | 85.44 |
| TraesCS7A01G284800.1 | Wheat | cytosol | 86.63 | 84.46 |
| GSMUA_Achr9P15560_001 | Banana | cytosol | 78.66 | 82.26 |
| HORVU7Hr1G062090.6 | Barley | cytosol | 86.63 | 81.4 |
| VIT_14s0006g03240.t01 | Wine grape | cytosol | 80.98 | 79.75 |
| Solyc02g085780.2.1 | Tomato | cytosol | 78.66 | 78.46 |
| KRG93861 | Soybean | nucleus | 79.43 | 78.23 |
| Bra008654.1-P | Field mustard | cytosol | 79.18 | 77.58 |
| CDX69479 | Canola | cytosol | 78.66 | 77.08 |
| PGSC0003DMT400032945 | Potato | extracellular | 77.38 | 76.98 |
| CDY26488 | Canola | cytosol | 78.41 | 76.63 |
| AT5G16040.1 | Thale cress | cytosol | 77.89 | 76.52 |
| AT3G02510.1 | Thale cress | cytosol | 76.86 | 76.08 |
| CDY34733 | Canola | cytosol | 65.3 | 75.82 |
| Bra021435.1-P | Field mustard | cytosol | 75.58 | 75.0 |
| Zm00001d003632_P003 | Maize | extracellular | 28.02 | 24.61 |
| Zm00001d043280_P001 | Maize | cytosol | 24.94 | 23.77 |
| Zm00001d021372_P001 | Maize | mitochondrion | 22.88 | 20.6 |
| Zm00001d052624_P007 | Maize | plastid | 23.39 | 19.87 |
| Zm00001d019595_P001 | Maize | cytosol | 23.91 | 19.25 |
| Zm00001d005395_P001 | Maize | cytosol | 23.91 | 19.25 |
| Zm00001d033172_P001 | Maize | cytosol | 22.62 | 18.33 |
| Zm00001d050985_P002 | Maize | cytosol | 24.16 | 16.91 |
| Zm00001d011805_P001 | Maize | cytosol | 27.51 | 11.73 |
| Zm00001d035723_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 27.25 | 11.56 |
| Zm00001d017641_P004 | Maize | cytosol | 23.65 | 10.69 |
| Zm00001d042074_P001 | Maize | cytosol | 28.28 | 10.08 |
| Zm00001d038882_P002 | Maize | cytosol | 27.25 | 10.05 |
| Zm00001d006773_P001 | Maize | cytosol | 10.28 | 9.93 |
| Zm00001d011851_P001 | Maize | cytosol | 28.28 | 9.84 |
| Zm00001d011660_P003 | Maize | cytosol | 25.71 | 9.46 |
| Zm00001d002876_P001 | Maize | mitochondrion | 26.22 | 9.38 |
| Zm00001d051479_P005 | Maize | nucleus | 24.94 | 9.01 |
| Zm00001d002544_P004 | Maize | cytosol, endoplasmic reticulum, nucleus | 23.39 | 8.2 |
| Os02t0684900-01 | Rice | cytosol | 0.26 | 0.23 |
| Os09t0560500-01 | Rice | mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| EMBL:BT040122 | EnsemblPlants:Zm00001d050380_P004 | EnsemblPlants:Zm00001d050380_T004 | EnsemblPlantsGene:Zm00001d050380 | EntrezGene:100273073 | Gene3D:2.130.10.30 |
| InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF206 |
| PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 | ProteinID:AQK52430.1 | ProteinID:AQK52434.1 | ProteinID:AQK52439.1 |
| ScanProsite:PS00626 | SUPFAM:SSF50985 | UniParc:UPI00017B77CF | UniProt:B4FSN4 | MapMan:35.1 | : |
Description
regulator of chromosome condensation3 regulator of chromosome condensation3
Coordinates
chr4:-:84839686..84845035
Molecular Weight (calculated)
41876.4 Da
IEP (calculated)
6.447
GRAVY (calculated)
-0.351
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPLRATAV LAWGSGEDGQ LGMGGNEEKD WPHFVEALGP YAVTAVVAGS RNSLAICDDG RLFTWGWNQR GTLGHPPETK TESSPGPVDA LAGFKIVQAA
101: IGGWHCLAVD DKGRAYAWGG NEYGQCGEEP ERKEDGTRAL RRDIPIPQRC ALKLKVRQVA AGGTHSVVLT QEGHVWTWGQ PWPPGDIKQI STPVRVQGLE
201: KVRVIAVGAF HNLALTEDVI LWAWGNNEYG QLGTGDTQPR SQPIRVEGLS DLSLVDIAAG GWHSTALTID GEVYAWGRGE HGRLGFGDDK SSHMVPLKVE
301: LLAGEDIVQV SCGGTHSVAL ARDGRMFSYG RGDHGRLGYG RKVTTGHPME LPINLPPLSS SRDGRWQAKY VACGGRHTLA IAEWTEATD
101: IGGWHCLAVD DKGRAYAWGG NEYGQCGEEP ERKEDGTRAL RRDIPIPQRC ALKLKVRQVA AGGTHSVVLT QEGHVWTWGQ PWPPGDIKQI STPVRVQGLE
201: KVRVIAVGAF HNLALTEDVI LWAWGNNEYG QLGTGDTQPR SQPIRVEGLS DLSLVDIAAG GWHSTALTID GEVYAWGRGE HGRLGFGDDK SSHMVPLKVE
301: LLAGEDIVQV SCGGTHSVAL ARDGRMFSYG RGDHGRLGYG RKVTTGHPME LPINLPPLSS SRDGRWQAKY VACGGRHTLA IAEWTEATD
001: MASATSVIAW GSGEDGQLGL GTDEEKELAS VVDALEPFNV RSVVGGSRNS LAICDDGKLF TWGWNQRGTL GHPPETKTES TPSLVKSLAN VKIVQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE
Arabidopsis Description
At5g16040 [Source:UniProtKB/TrEMBL;Acc:Q9LFS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.