Factsheet for Zm00001d019595_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35074	Sorghum	cytosol	98.55	98.55
Zm00001d005395_P001	Maize	cytosol	96.07	96.07
TraesCS2D01G241400.2	Wheat	cytosol	88.61	88.43
TraesCS2B01G254900.2	Wheat	cytosol	88.2	88.02
TraesCS2A01G236300.4	Wheat	cytosol	88.41	86.97
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	78.88	77.44
GSMUA_Achr5P12060_001	Banana	mitochondrion	71.43	76.33
PGSC0003DMT400003817	Potato	cytosol	56.11	70.94
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.05	70.73
VIT_19s0014g03080.t01	Wine grape	cytosol	69.57	68.29
KRH22127	Soybean	cytosol	66.46	66.19
PGSC0003DMT400032346	Potato	plasma membrane	65.42	65.56
Solyc07g063300.2.1	Tomato	plasma membrane	65.42	65.02
CDX97668	Canola	cytosol	63.15	63.94
CDY56827	Canola	cytosol	62.73	63.52
KRH27216	Soybean	cytosol	65.84	62.97
Bra027244.1-P	Field mustard	cytosol	63.15	62.24
AT3G15430.2	Thale cress	cytosol	62.32	61.68
KRH49501	Soybean	cytosol	18.84	52.6
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	62.53	36.74
CDY20113	Canola	endoplasmic reticulum, extracellular	62.11	36.36
CDY21840	Canola	endoplasmic reticulum, extracellular	61.9	36.2
Zm00001d003632_P003	Maize	extracellular	24.22	26.41
Zm00001d050380_P004	Maize	cytosol	19.25	23.91
Zm00001d043280_P001	Maize	cytosol	19.46	23.04
Zm00001d032229_P002	Maize	mitochondrion	19.67	22.67
Zm00001d050985_P002	Maize	cytosol	24.02	20.86
Zm00001d033172_P001	Maize	cytosol	19.46	19.58
Zm00001d021372_P001	Maize	mitochondrion	16.36	18.29
Zm00001d052624_P007	Maize	plastid	16.77	17.69
Zm00001d011805_P001	Maize	cytosol	25.26	13.38
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	24.84	13.09
Zm00001d042074_P001	Maize	cytosol	29.19	12.92
Zm00001d017641_P004	Maize	cytosol	22.57	12.66
Zm00001d011851_P001	Maize	cytosol	29.19	12.61
Zm00001d002876_P001	Maize	mitochondrion	27.54	12.24
Zm00001d038882_P002	Maize	cytosol	26.09	11.94
Zm00001d011660_P003	Maize	cytosol	24.43	11.16
Zm00001d051479_P005	Maize	nucleus	24.02	10.78
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	24.43	10.63
Zm00001d006773_P001	Maize	cytosol	7.87	9.43

Protein Annotations

EMBL:BT064518	EnsemblPlants:Zm00001d019595_P001	EnsemblPlants:Zm00001d019595_T001	EnsemblPlantsGene:Zm00001d019595	EntrezGene:100382481	Gene3D:2.130.10.30
InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF302
PFAM:PF00415	PFAM:PF13540	PFscan:PS50012	PRINTS:PR00633	ProteinID:ONM53384.1	ScanProsite:PS00626
SEG:seg	SUPFAM:SSF50985	UniParc:UPI0001948F75	UniProt:C0P899	MapMan:35.1	:

Description

Regulator of chromosome condensation (RCC1) family protein

Coordinates

chr7:+:45546083..45550883

Molecular Weight (calculated)

51364.0 Da

IEP (calculated)

6.983

GRAVY (calculated)

-0.048

Length

483 amino acids

Sequence
(BLAST)

001: MAGEKAPRAF SIEELPGHLI GEVLTSGGLA AADLARLEAT CRALRPLAEY AASKLCAARA AFAAMGPAAR GELLERCGGS WKRVLRFLQS VEQSSGTVET
101: SSGSMQVATG RYHTLLVHDS SVYSCGSSLC GVLGHGPDTT QCAAFSRVSF PSLSRVINIS ASHNHAAFVT ESGEVFTCGD NSSLCCGHGE VGRTIFRPMQ
201: VEALKGIPCK QVATGLSFTV ILTRDGQVYT CGSNTHGQLG HGDTIDRATP KLIELFEGPT QVVQIAAGAS YTFAVTDDGT VHSFGSCTNF CLGHGDQHDE
301: LLPRAIQSFK RRNIHVVRVS AGDEHAVALD ALGHVYTWGR GYCGALGHGD ENDKTSPELI GSLKGQVAVQ VCARKRKTFV LTDEGSVVAF GWMGFGSLGF
401: LDRGTSDKVM RPRVLESLQD HYVSQISTGL YHTVAVTNKG IVFGFGDNER AQLGQEYIRG CLKPTEIMFQ KSIEDIPIAA PSG

Best Arabidopsis Sequence Match ( AT3G15430.6 )
(BLAST)

001: MADRNCLISF EDLPSHLILE VLTSGRLSAV DLLSLELTSK VFGGSHGFYP LKFRSLADYA ASQLCSMHPV YVGMGLTTQK ELFANCEGNW KRLFSFLQSV
101: EQSSDMVETS QGKMQIATGK YHTLLINNSK VYSCGVSLSG VLAHGSETTQ CVAFTPIEFP FPAQVAQVSA TQNHSAFVLQ SGQVLTCGDN SSHCCGHLDT
201: SRPIFRPKLV EALKGTPCKQ VAAGLHFTVF LSREGHAYTC GSNTHGQLGH GDTLDRPVPK VVEFLKTIGP VVQIAAGPSY VLAVTQDGSV YSFGSGSNFC
301: LGHGEQQDEL QPRVIQAFKR KGIHILRVSA GDEHAVALDS NGRVYTWGKG YCGALGHGDE NDKITPQVLV NLNNCLAVQV CARKRKTFVL VEGGLLYGFG
401: WMGFGSLGFP DRGVSDKVLR PRVLECLKPH RVSQVSTGLY HTIVVTQRGR IFGFGDNERA QLGHDSLRGC LEPTEIFLHC GRSRSRLC

Arabidopsis Description

MJK13.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9LDU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.