Factsheet for Zm00001d006773_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011805_P001	Maize	cytosol	89.83	39.69
KXG34192	Sorghum	cytosol	86.85	38.38
KRH30227	Soybean	cytosol	41.69	37.25
TraesCS3D01G522600.2	Wheat	cytosol	76.67	35.56
TraesCS3A01G512900.1	Wheat	cytosol	77.92	34.47
KRH08736	Soybean	endoplasmic reticulum	59.31	34.29
TraesCS3B01G581600.2	Wheat	cytosol	76.92	33.99
HORVU3Hr1G112690.2	Barley	cytosol, plastid	76.43	33.92
Os01t0964800-01	Rice	mitochondrion	46.4	32.3
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	70.47	30.97
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	62.53	25.74
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	61.29	25.03
KRG91629	Soybean	cytosol	64.76	23.77
CDY48550	Canola	cytosol	55.83	22.96
KRH35179	Soybean	cytosol	63.77	22.95
VIT_18s0166g00210.t01	Wine grape	cytosol	64.02	22.85
Solyc04g071040.2.1	Tomato	cytosol	63.28	22.65
PGSC0003DMT400002081	Potato	cytosol	63.03	22.56
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	59.55	22.26
KRH70333	Soybean	cytosol	60.79	21.88
CDY47138	Canola	cytosol	55.83	21.49
CDY11586	Canola	cytosol	55.83	21.37
Bra003698.1-P	Field mustard	mitochondrion	57.07	21.36
Bra016214.1-P	Field mustard	cytosol	55.58	21.33
AT1G76950.1	Thale cress	cytosol	57.57	21.03
Bra015708.1-P	Field mustard	cytosol	53.85	20.2
CDX87557	Canola	cytosol	53.6	20.13
CDX68076	Canola	cytosol	41.44	20.12
CDX88324	Canola	cytosol	52.36	19.89
Zm00001d002876_P001	Maize	mitochondrion	48.14	17.85
KRH08750	Soybean	cytosol	27.79	17.58
Zm00001d042074_P001	Maize	cytosol	45.66	16.87
Zm00001d011851_P001	Maize	cytosol	45.66	16.46
Zm00001d038882_P002	Maize	cytosol	42.68	16.3
Zm00001d011660_P003	Maize	cytosol	42.43	16.18
Zm00001d017641_P004	Maize	cytosol	30.27	14.17
Zm00001d051479_P005	Maize	nucleus	32.26	12.08
Zm00001d003632_P003	Maize	extracellular	12.9	11.74
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	30.52	11.08
Zm00001d050380_P004	Maize	cytosol	9.93	10.28
Zm00001d032229_P002	Maize	mitochondrion	10.42	10.02
Zm00001d043280_P001	Maize	cytosol	9.68	9.56
Zm00001d021372_P001	Maize	mitochondrion	9.93	9.26
Zm00001d052624_P007	Maize	plastid	10.42	9.17
KRH30228	Soybean	cytosol	8.68	8.6
Zm00001d019595_P001	Maize	cytosol	9.43	7.87
Zm00001d005395_P001	Maize	cytosol	9.18	7.66
Zm00001d033172_P001	Maize	cytosol	8.93	7.5
Zm00001d050985_P002	Maize	cytosol	7.69	5.58
CDY70949	Canola	cytosol	1.49	1.69

Protein Annotations

Gene3D:2.130.10.30	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6F0H9	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR013083	InterPro:IPR017455
ProteinID:ONM25008.1	PFAM:PF00415	PFAM:PF01363	PFscan:PS50012	PFscan:PS50178	PANTHER:PTHR22870
PANTHER:PTHR22870:SF199	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50985	SUPFAM:SSF57903
UniParc:UPI0008424FB2	EnsemblPlantsGene:Zm00001d006773	EnsemblPlants:Zm00001d006773_P001	EnsemblPlants:Zm00001d006773_T001	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel
InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain

Coordinates

chr2:-:216391976..216393516

Molecular Weight (calculated)

44267.3 Da

IEP (calculated)

10.592

GRAVY (calculated)

-0.470

Length

403 amino acids

Sequence
(BLAST)

001: MEEGINRILK NTIKGSIPST TAREVIVTQS SSSMSSGKLF TWGDGDKHRL GHGDKEPKLK PTIACGHSLT VGLTTSRQVL SMGNIVYGQL GNPRSNVLTN
101: KSEVFTWGKG ANGRLGHGDV EDRKIPTVVE SLRDRAIRHI ACGSNFTSAI CQHKWVSGAE QSQYASCRQP FGFTRKRHNC HNCGLVHCNV CTSHKVLRAA
201: LAPNPAKPYR VCDSCFMKLN SATYSSTINK KKEVVPRHSG ESNHDAKLAR AIVPSNLDMI RSLDSKAAKQ GKKTDALSFL RTPQMSSLLQ LRDITLSGVI
301: DLNKSVPRAV RTSVRSLNSS RVVSPFSRKP SPPRSTTPVP TTHGLSIAKT AADSLAKTNE MLSQEVERLR AQVDNLRRRC ELQELELHMK SIQCQNCMGT
401: IQM

Best Arabidopsis Sequence Match ( AT1G76950.1 )
(BLAST)

0001: MADLVTYSNA DHNLEQALIT LKKGTQLLKY GRKGKPKFYP FRLSSDEKSL IWISSSGEKR LKLASVSKIV PGQRTAVFQR YLRPEKDYLS FSLLYNGKKK
0101: SLDLICKDKV EAEIWIGGLK TLISTGQGGR SKIDGWSGGG LSVDASRELT SSSPSSSSAS ASRGHSSPGT PFNIDPITSP KSAEPEVPPT DSEKSHVALD
0201: NKNMQTKVSG SDGFRVSVSS AQSSSSHGSA ADDSDALGDV YIWGEVICDN VVKVGIDKNA SYLTTRTDVL VPKPLESNIV LDVHQIACGV RHAAFVTRQG
0301: EIFTWGEESG GRLGHGIGKD VFHPRLVESL TATSSVDFVA CGEFHTCAVT LAGELYTWGD GTHNVGLLGH GSDISHWIPK RIAGSLEGLH VASVSCGPWH
0401: TALITSYGRL FTFGDGTFGV LGHGDKETVQ YPREVESLSG LRTIAVSCGV WHTAAVVEII VTQSNSSSVS SGKLFTWGDG DKNRLGHGDK DPRLKPTCVP
0501: ALIDYNFHKI ACGHSLTVGL TTSGQVFTMG STVYGQLGNL QTDGKLPCLV EDKLASEFVE EISCGAYHVA ALTSRNEVYT WGKGANGRLG HGDLEDRKVP
0601: TIVEALKDRH VKYIACGSNY TAAICLHKWV SGAEQSQCST CRLAFGFTRK RHNCYNCGLV HCHSCSSKKA FRAALAPSAG RLYRVCDSCY VKLSKVSEIN
0701: DTNRRNSAVP RLSGENRDRL DKSEIRLAKF GTSNMDLIKQ LDSKAAKQGK KTDTFSLGRN SQLPSLLQLK DAVQSNIGDM RRATPKLAQA PSGISSRSVS
0801: PFSRRSSPPR SATPMPSTSG LYFPVGIADN MKKTNEILNQ EIVKLRTQVD SLTQKCEFQE VELQNSVKKT QEALALAEEE SAKSRAAKEA IKSLIAQLKD
0901: VAEKLPPGES VKLACLQNGL DQNGFHFPEE NGFHPSRSES MTSSISSVAP FDFAFANASW SNLQSPKQTP RASERNSNAY PADPRLSSSG SVISERIEPF
1001: QFQNNSDNGS SQTGVNNTNQ VEAEWIEQYE PGVYITLVAL HDGTRDLRRV RFSRRRFGEH QAETWWSENR EKVYEKYNVR VSEKSTASQT HRDRDEEEED
1101: IPH

Arabidopsis Description

PRAF1PH, RCC1 and FYVE domains-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q947D2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.