Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G512900.1 | Wheat | cytosol | 96.81 | 96.49 |
| TraesCS3D01G522600.2 | Wheat | cytosol | 91.74 | 95.86 |
| TraesCS3B01G581600.2 | Wheat | cytosol | 95.37 | 94.96 |
| KXG34192 | Sorghum | cytosol | 82.71 | 82.35 |
| Zm00001d011805_P001 | Maize | cytosol | 81.83 | 81.47 |
| Zm00001d006773_P001 | Maize | cytosol | 33.92 | 76.43 |
| HORVU1Hr1G002740.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 76.1 | 76.19 |
| Os01t0964800-01 | Rice | mitochondrion | 48.24 | 75.65 |
| KRH08736 | Soybean | endoplasmic reticulum | 44.82 | 58.39 |
| GSMUA_Achr6P13030_001 | Banana | endoplasmic reticulum | 59.14 | 54.85 |
| CDY48550 | Canola | cytosol | 57.6 | 53.37 |
| HORVU0Hr1G028990.2 | Barley | cytosol | 23.13 | 53.3 |
| VIT_18s0166g00210.t01 | Wine grape | cytosol | 65.42 | 52.61 |
| KRG91629 | Soybean | cytosol | 63.44 | 52.46 |
| KRH35179 | Soybean | cytosol | 63.88 | 51.79 |
| Solyc04g071040.2.1 | Tomato | cytosol | 63.99 | 51.6 |
| PGSC0003DMT400002081 | Potato | cytosol | 63.77 | 51.42 |
| GSMUA_Achr2P20470_001 | Banana | endoplasmic reticulum, plasma membrane | 55.84 | 51.37 |
| KRH30227 | Soybean | cytosol | 25.11 | 50.55 |
| HORVU3Hr1G108180.1 | Barley | mitochondrion | 9.25 | 50.3 |
| AT5G42140.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 59.69 | 50.28 |
| KRH70333 | Soybean | cytosol | 61.78 | 50.09 |
| CDY11586 | Canola | cytosol | 58.04 | 50.05 |
| CDY47138 | Canola | cytosol | 57.49 | 49.86 |
| AT1G76950.1 | Thale cress | cytosol | 60.02 | 49.41 |
| KRH08750 | Soybean | cytosol | 34.58 | 49.29 |
| Bra016214.1-P | Field mustard | cytosol | 56.94 | 49.24 |
| Bra003698.1-P | Field mustard | mitochondrion | 58.15 | 49.03 |
| CDX87557 | Canola | cytosol | 56.94 | 48.18 |
| Bra015708.1-P | Field mustard | cytosol | 56.94 | 48.14 |
| CDX88324 | Canola | cytosol | 56.06 | 47.97 |
| KRH30228 | Soybean | cytosol | 21.04 | 46.93 |
| HORVU2Hr1G124270.22 | Barley | cytosol, mitochondrion, nucleus | 53.63 | 45.26 |
| CDX68076 | Canola | cytosol | 38.55 | 42.17 |
| HORVU1Hr1G078890.1 | Barley | cytosol | 44.49 | 38.44 |
| HORVU1Hr1G056870.2 | Barley | cytosol, endoplasmic reticulum, nucleus | 46.26 | 37.33 |
| HORVU3Hr1G107820.4 | Barley | endoplasmic reticulum | 45.04 | 37.22 |
| HORVU7Hr1G038070.12 | Barley | cytosol | 37.33 | 35.95 |
| HORVU2Hr1G076180.1 | Barley | cytosol, endoplasmic reticulum | 15.31 | 31.52 |
| CDY70949 | Canola | cytosol | 11.67 | 29.94 |
| HORVU6Hr1G030600.2 | Barley | plasma membrane | 14.32 | 29.41 |
| HORVU5Hr1G089510.1 | Barley | cytosol | 11.56 | 29.17 |
| HORVU6Hr1G066460.5 | Barley | cytosol | 33.48 | 28.49 |
| HORVU1Hr1G016430.4 | Barley | cytosol | 12.22 | 27.96 |
| HORVU2Hr1G104550.10 | Barley | cytosol, nucleus, plastid | 32.93 | 25.89 |
| HORVU7Hr1G062090.6 | Barley | cytosol | 11.45 | 25.12 |
| HORVU5Hr1G053180.5 | Barley | cytosol | 13.0 | 24.58 |
| HORVU3Hr1G076310.2 | Barley | cytosol, mitochondrion, nucleus | 11.34 | 22.69 |
| HORVU5Hr1G034530.6 | Barley | cytosol | 11.45 | 19.48 |
| HORVU2Hr1G083590.1 | Barley | cytosol | 9.25 | 18.67 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:BRX_N | InterPro:Brevis_radix_dom | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | EnsemblPlantsGene:HORVU3Hr1G112690 | EnsemblPlants:HORVU3Hr1G112690.2 | InterPro:IPR000408 |
| InterPro:IPR009091 | InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 | UniProt:M0UP11 | PFAM:PF00415 |
| PFAM:PF01363 | PFAM:PF08381 | PFAM:PF13713 | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 |
| PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF199 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens |
| SMART:SM00064 | SUPFAM:SSF50985 | SUPFAM:SSF57903 | UniParc:UPI0002953943 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:686748380..686753966
Molecular Weight (calculated)
98229.5 Da
IEP (calculated)
8.399
GRAVY (calculated)
-0.434
Length
908 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTKVAASDV IRVSTSSAPS TSSHGSAQDD CDSSGDVYVW GEVICESSAR AGSDVVIKSA VRQDVLLPKP LESNLVLDVY HVDCGVKHAA LVTKNGEVFT
101: WGEESGGRLG HGSREDYVRP SLVNSLAVSN VDFVACGEFH TCAVTTAGEL YTWGDGTHNI GLLGHGTDIS HWIPKRISGA LDGLQVAYVS CGTWHTALIT
201: TTGQLFTFGD GTFGVLGHGN RESISCPREV ESLSGLRTIA VACGVWHTAA VVEVIVTQSS SSLSSGKLFT WGDGDKHRLG HGDKDPRVKP TCVASLIDYD
301: FHRIACGHGL TVGLTTSGQV WSMGNTVYGQ LGNPRSDGKL PCLVEEIMGE QVVQVACGSY HVAVLTVKSE VFTWGKGANG RLGHGDIDDR KIPTLVEALR
401: DRAVRHISCG ANFTAAICQH KLMPGAEQSQ CTSCRQPFGF TRKRHNCHNC GHVHCNACTS RKVLRAALAA NPGKPHRVCD SCFLKLNNAI DSSAINKRKD
501: TVPRLSGESN SDTKLAKAII PSNLDMIRSL DSKAAKQGKK TDALSFLRSP QMSSLLQLRD IALSGGPDMS RPVPRAARTP ATRSVNTSRA VSPFSRRPSP
601: PRSTTPVPTT HGLSIAKSAT DNLTKKNEML NQEVERLRGQ VDSLRHRCEV QELELQKSAK KVQEAMAMVA EESAKSKAAK EVIKALTAQL KDMAERLPPD
701: DGSDAKQSQF PNGIESHASI YSSMDSVHQS RNESLNALNM PSLNTGRSLH PNGISCQQRS PDVSGNNEVS AHRHRVSSPH DGALSNRRAH SSSDELFASS
801: RRAADSASMD TMSLQNGEDG YKSRGTLSLS STEVKAEWIE QYEPGVYITL TTLLDGTRDL KRVRFSRRRF GEHQAESWWN ENHDKVYERY GVRSSERVSS
901: AASTRSAR
101: WGEESGGRLG HGSREDYVRP SLVNSLAVSN VDFVACGEFH TCAVTTAGEL YTWGDGTHNI GLLGHGTDIS HWIPKRISGA LDGLQVAYVS CGTWHTALIT
201: TTGQLFTFGD GTFGVLGHGN RESISCPREV ESLSGLRTIA VACGVWHTAA VVEVIVTQSS SSLSSGKLFT WGDGDKHRLG HGDKDPRVKP TCVASLIDYD
301: FHRIACGHGL TVGLTTSGQV WSMGNTVYGQ LGNPRSDGKL PCLVEEIMGE QVVQVACGSY HVAVLTVKSE VFTWGKGANG RLGHGDIDDR KIPTLVEALR
401: DRAVRHISCG ANFTAAICQH KLMPGAEQSQ CTSCRQPFGF TRKRHNCHNC GHVHCNACTS RKVLRAALAA NPGKPHRVCD SCFLKLNNAI DSSAINKRKD
501: TVPRLSGESN SDTKLAKAII PSNLDMIRSL DSKAAKQGKK TDALSFLRSP QMSSLLQLRD IALSGGPDMS RPVPRAARTP ATRSVNTSRA VSPFSRRPSP
601: PRSTTPVPTT HGLSIAKSAT DNLTKKNEML NQEVERLRGQ VDSLRHRCEV QELELQKSAK KVQEAMAMVA EESAKSKAAK EVIKALTAQL KDMAERLPPD
701: DGSDAKQSQF PNGIESHASI YSSMDSVHQS RNESLNALNM PSLNTGRSLH PNGISCQQRS PDVSGNNEVS AHRHRVSSPH DGALSNRRAH SSSDELFASS
801: RRAADSASMD TMSLQNGEDG YKSRGTLSLS STEVKAEWIE QYEPGVYITL TTLLDGTRDL KRVRFSRRRF GEHQAESWWN ENHDKVYERY GVRSSERVSS
901: AASTRSAR
0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.