CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87557	Canola	cytosol	97.46	96.37
CDX68076	Canola	cytosol	68.43	87.47
CDY48550	Canola	cytosol	80.49	87.14
CDY70949	Canola	cytosol	28.93	86.72
AT1G76950.1	Thale cress	cytosol	88.78	85.4
KRH08750	Soybean	cytosol	43.45	72.37
KRH35179	Soybean	cytosol	70.03	66.34
KRG91629	Soybean	cytosol	68.61	66.3
VIT_18s0166g00210.t01	Wine grape	cytosol	70.5	66.25
PGSC0003DMT400002081	Potato	cytosol	70.31	66.25
Solyc04g071040.2.1	Tomato	cytosol	70.03	65.99
KRH70333	Soybean	cytosol	69.56	65.89
KRH30228	Soybean	cytosol	24.6	64.13
CDY11586	Canola	cytosol	63.34	63.82
CDY47138	Canola	cytosol	62.87	63.71
KRH08736	Soybean	endoplasmic reticulum	40.81	62.12
Os01t0964800-01	Rice	mitochondrion	33.84	62.0
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	54.57	58.66
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	49.1	57.44
GSMUA_Achr8P07850_001	Banana	cytosol	59.75	57.38
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	48.73	57.0
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	48.73	57.0
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	48.82	56.99
KRH30227	Soybean	cytosol	24.22	56.98
CDY66504	Canola	cytosol	44.11	56.73
KXG34192	Sorghum	cytosol	48.73	56.69
Zm00001d011805_P001	Maize	cytosol	48.54	56.47
HORVU3Hr1G112690.2	Barley	cytosol, plastid	47.97	56.06
TraesCS3A01G512900.1	Wheat	cytosol	47.69	55.54
TraesCS3D01G522600.2	Wheat	cytosol	45.24	55.24
TraesCS3B01G581600.2	Wheat	cytosol	47.31	55.04
EES18851	Sorghum	cytosol, plastid	47.5	55.02
EES13137	Sorghum	cytosol	55.14	54.98
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	47.41	54.85
Os04t0686200-01	Rice	plasma membrane	54.48	54.68
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	50.42	54.65
Os05t0106700-00	Rice	mitochondrion	47.88	54.04
TraesCS2D01G589800.1	Wheat	cytosol	54.01	53.55
TraesCS2B01G609200.1	Wheat	cytosol	53.91	53.46
TraesCS2A01G581400.1	Wheat	cytosol	53.72	53.27
HORVU2Hr1G124270.22	Barley	cytosol, mitochondrion, nucleus	53.91	53.16
Zm00001d002876_P001	Maize	mitochondrion	54.1	52.81
Zm00001d006773_P001	Maize	cytosol	19.89	52.36
GSMUA_AchrUn_...	Banana	nucleus	56.83	52.3
CDX85076	Canola	cytosol	48.54	49.61
CDY12764	Canola	cytosol	48.73	49.33
CDX69686	Canola	nucleus	49.67	49.25
CDX85690	Canola	nucleus	49.67	49.25
HORVU3Hr1G108180.1	Barley	mitochondrion	7.73	49.1
CDX91165	Canola	nucleus	49.48	48.93
CDX97187	Canola	nucleus	48.54	48.68
CDX92532	Canola	nucleus	50.71	48.29
CDX87986	Canola	cytosol	9.33	48.06
CDY13998	Canola	nucleus	50.33	47.85
CDX88891	Canola	cytosol, mitochondrion, nucleus	50.33	47.05
CDX70876	Canola	cytosol	49.01	46.64
CDX77534	Canola	cytosol	48.73	46.53
CDY49416	Canola	cytosol	48.16	45.67
CDY28580	Canola	plasma membrane	41.38	42.05
CDY44086	Canola	plasma membrane, vacuole	41.56	41.92
CDX77871	Canola	cytosol	36.29	40.57
CDY21795	Canola	cytosol	36.38	40.33
CDY31624	Canola	cytosol	35.25	38.05
CDX87989	Canola	cytosol	35.06	37.13
CDY43762	Canola	cytosol	13.2	32.71
CDX84451	Canola	cytosol	13.29	31.61
CDY31347	Canola	cytosol	12.82	31.19
CDY69131	Canola	cytosol	9.43	31.15
CDX81201	Canola	cytosol	12.91	31.14
CDY46423	Canola	cytosol	11.12	31.13
CDY60046	Canola	cytosol	13.1	31.03
CDY39843	Canola	cytosol	11.69	30.69
CDY16215	Canola	cytosol	10.84	29.79
CDY34733	Canola	cytosol	9.14	28.96
CDY44785	Canola	mitochondrion	11.69	28.64
CDX69479	Canola	cytosol	10.56	28.21
CDY40735	Canola	mitochondrion	11.59	28.15
CDY26488	Canola	cytosol	10.46	27.89
CDY57523	Canola	cytosol	11.88	26.75
CDY43240	Canola	cytosol	11.78	26.48
CDX97668	Canola	cytosol	11.88	26.42
CDY56827	Canola	cytosol	11.88	26.42
CDY02190	Canola	mitochondrion	10.84	25.96
CDX96062	Canola	plastid	12.63	25.87
CDY51633	Canola	mitochondrion	10.74	25.68
CDY39172	Canola	cytosol	11.88	25.61
CDY04192	Canola	cytosol	11.88	25.61
CDY01845	Canola	plastid	12.35	25.34
CDY28863	Canola	cytosol	12.16	24.81
CDY56518	Canola	cytosol, plastid	12.06	24.62
CDY13609	Canola	cytosol	12.16	24.39
CDX83586	Canola	cytosol, plastid	12.06	24.2
CDX99731	Canola	cytosol, plastid	12.16	24.11
CDY40988	Canola	cytosol, plastid	11.69	22.59
CDY14709	Canola	nucleus	11.59	17.8
CDY20113	Canola	endoplasmic reticulum, extracellular	11.97	15.39
CDY21840	Canola	endoplasmic reticulum, extracellular	11.97	15.38

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078DIH6	InterPro:BRX_N
InterPro:Brevis_radix_dom	EnsemblPlants:CDX88324	ProteinID:CDX88324	ProteinID:CDX88324.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00147834001	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091
InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363
PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633
ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF91
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903
UniParc:UPI0004EE9435	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC06g37680D

Coordinates

chrLK031855:+:376447..382349

Molecular Weight (calculated)

115610.0 Da

IEP (calculated)

8.150

GRAVY (calculated)

-0.431

Length

1061 amino acids

Sequence
(BLAST)

0001: MADLVSYCNA PPDHNVEQAL ITLKKGSQLL KYGRKGKPKF YPFRLSSDEK YLIWISSSGE KRLKLASVSK IVPGQRTAVF QRYLRPEKDY LSFSLLYNGK
0101: KKSLDLICKD KVEAEAWIGG LRALISAGQG GRSKIDGWNG GNISVDASRD LTSSSQSSSS ATTSHSHSSP GTPFSFDPIA SPKSEVPSTD SEKSHVLLDT
0201: KTMQTKVSGS DGFRVSVSSA QSSSSHGSGA DDADALGDVY IWGEVIISDN AVTATRTDVL VPKPLESNIV LEVHQIACGV RHAAFVTRQG EIFTWGEESG
0301: GRLGHGMGKD VLHPRLVDSL ATNFDFVSCG EFHTCAVTLS GELYTWGDGT HSVGLLGHGS DISHWIPKRI AGPLEGLHVA SVACGPWHTA LVTSHGRLFT
0401: FGDGTFGVLG HGDRETVRSP REVESLSGLR TIAVSCGVWH TAAVVEIIVA PQSNASSGKL FTWGDGDKNR LGHGDKDARL KPTCVPSLID YNFHRVACGH
0501: SLTVGLTTSG QVFTMGSTVY GQLGNSLADG KVPCLVEDKL ASEFVEEISC GAYHVAALTS RNEVYTWGKG ANGRLGHGDL EDRKVPTLVE GLKDRHVKYI
0601: ACGSSYTAAI CLHKWVSGAE QSQCSACRLA FGFTRKRHNC YNCGLVHCHS CSSKKAFGAA LAPSAGRLYR VCDVCYVKLS KVSDTSRRNS VVPRLSGENK
0701: DRLDKSEIRL AKFGATNVDL IKQLDSKAAK QGKKSSDNFR NSQLPSLLQL KDVVHSRSVS PFSRRSSPPP RPATPMPSLT SGIYFPVGIA DNMKKTNEIL
0801: NQEIIKLRTQ VDSLTQKCEL QEVELKNSVK KTQEALALAE EESAKSRAAK EAIKSLIAQL KDVAEKLPPG ESIKLACLQN GFNFPEENGF LHSRSESMTS
0901: SVSSVAPSDF AFANASSRSS LQSPNHTPRA FERNNNNAYP ADPRLSSSGS VISERHEPFQ FQNDNGSSHT GAVDNTNDVE AEWIEQYEPG VYITLVALHD
1001: GTRELRRVRF SRRRFGENQA ETWWSENREN VYEKYNVRVS EKPTASQTNR DRDHEEEDVA Q

Best Arabidopsis Sequence Match ( AT1G76950.1 )
(BLAST)

0001: MADLVTYSNA DHNLEQALIT LKKGTQLLKY GRKGKPKFYP FRLSSDEKSL IWISSSGEKR LKLASVSKIV PGQRTAVFQR YLRPEKDYLS FSLLYNGKKK
0101: SLDLICKDKV EAEIWIGGLK TLISTGQGGR SKIDGWSGGG LSVDASRELT SSSPSSSSAS ASRGHSSPGT PFNIDPITSP KSAEPEVPPT DSEKSHVALD
0201: NKNMQTKVSG SDGFRVSVSS AQSSSSHGSA ADDSDALGDV YIWGEVICDN VVKVGIDKNA SYLTTRTDVL VPKPLESNIV LDVHQIACGV RHAAFVTRQG
0301: EIFTWGEESG GRLGHGIGKD VFHPRLVESL TATSSVDFVA CGEFHTCAVT LAGELYTWGD GTHNVGLLGH GSDISHWIPK RIAGSLEGLH VASVSCGPWH
0401: TALITSYGRL FTFGDGTFGV LGHGDKETVQ YPREVESLSG LRTIAVSCGV WHTAAVVEII VTQSNSSSVS SGKLFTWGDG DKNRLGHGDK DPRLKPTCVP
0501: ALIDYNFHKI ACGHSLTVGL TTSGQVFTMG STVYGQLGNL QTDGKLPCLV EDKLASEFVE EISCGAYHVA ALTSRNEVYT WGKGANGRLG HGDLEDRKVP
0601: TIVEALKDRH VKYIACGSNY TAAICLHKWV SGAEQSQCST CRLAFGFTRK RHNCYNCGLV HCHSCSSKKA FRAALAPSAG RLYRVCDSCY VKLSKVSEIN
0701: DTNRRNSAVP RLSGENRDRL DKSEIRLAKF GTSNMDLIKQ LDSKAAKQGK KTDTFSLGRN SQLPSLLQLK DAVQSNIGDM RRATPKLAQA PSGISSRSVS
0801: PFSRRSSPPR SATPMPSTSG LYFPVGIADN MKKTNEILNQ EIVKLRTQVD SLTQKCEFQE VELQNSVKKT QEALALAEEE SAKSRAAKEA IKSLIAQLKD
0901: VAEKLPPGES VKLACLQNGL DQNGFHFPEE NGFHPSRSES MTSSISSVAP FDFAFANASW SNLQSPKQTP RASERNSNAY PADPRLSSSG SVISERIEPF
1001: QFQNNSDNGS SQTGVNNTNQ VEAEWIEQYE PGVYITLVAL HDGTRDLRRV RFSRRRFGEH QAETWWSENR EKVYEKYNVR VSEKSTASQT HRDRDEEEED
1101: IPH

Arabidopsis Description

PRAF1PH, RCC1 and FYVE domains-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q947D2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.