CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 1
plasma membrane 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44086	Canola	plasma membrane, vacuole	97.8	97.05
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	95.5	86.1
AT1G69710.1	Thale cress	cytosol	80.08	80.31
VIT_12s0057g00540.t01	Wine grape	cytosol, mitochondrion	10.44	58.6
KRH45886	Soybean	nucleus	50.0	54.83
VIT_01s0026g02170.t01	Wine grape	cytosol	46.55	53.52
KRG99112	Soybean	cytosol	48.47	51.63
PGSC0003DMT400059356	Potato	cytosol	49.23	49.85
GSMUA_Achr4P00510_001	Banana	cytosol	43.97	47.76
CDX85690	Canola	nucleus	48.37	47.2
CDX91165	Canola	nucleus	48.28	46.97
CDX69686	Canola	nucleus	47.7	46.54
CDX97187	Canola	nucleus	46.84	46.22
CDX87986	Canola	cytosol	9.0	45.63
CDX92532	Canola	nucleus	48.37	45.33
CDY70949	Canola	cytosol	15.13	44.63
CDY13998	Canola	nucleus	47.61	44.53
CDX88891	Canola	cytosol, mitochondrion, nucleus	48.08	44.23
CDX70876	Canola	cytosol	47.03	44.04
CDY66504	Canola	cytosol	34.77	44.0
TraesCS7A01G185400.1	Wheat	cytosol	42.15	43.48
TraesCS7B01G090600.1	Wheat	cytosol	42.24	43.24
TraesCS7D01G187100.3	Wheat	cytosol	42.05	43.0
CDX77871	Canola	cytosol	38.7	42.57
HORVU7Hr1G038070.12	Barley	cytosol	38.31	42.42
CDY21795	Canola	cytosol	38.51	42.01
CDY47138	Canola	cytosol	41.76	41.64
CDX88324	Canola	cytosol	42.05	41.38
CDY11586	Canola	cytosol	41.57	41.22
CDX87557	Canola	cytosol	41.95	40.82
CDY48550	Canola	cytosol	36.69	39.08
CDX85076	Canola	cytosol	37.84	38.05
CDY12764	Canola	cytosol	37.45	37.31
CDX68076	Canola	cytosol	28.74	36.14
CDX77534	Canola	cytosol	37.55	35.28
CDY31624	Canola	cytosol	32.76	34.79
CDY49416	Canola	cytosol	37.26	34.76
CDX87989	Canola	cytosol	32.76	34.13
CDY46423	Canola	cytosol	11.88	32.72
CDY69131	Canola	cytosol	9.96	32.4
GSMUA_Achr7P20980_001	Banana	cytosol	43.77	31.45
CDY16215	Canola	cytosol	11.59	31.35
CDY43762	Canola	cytosol	12.45	30.37
CDY31347	Canola	cytosol	12.55	30.05
CDX84451	Canola	cytosol	12.84	30.04
CDY39843	Canola	cytosol	11.59	29.95
CDX81201	Canola	cytosol	12.55	29.77
CDY60046	Canola	cytosol	12.55	29.24
CDY44785	Canola	mitochondrion	11.97	28.87
CDY40735	Canola	mitochondrion	11.88	28.38
CDY02190	Canola	mitochondrion	11.69	27.54
CDY51633	Canola	mitochondrion	11.69	27.48
CDY34733	Canola	cytosol	8.43	26.27
CDY57523	Canola	cytosol	11.78	26.11
CDY43240	Canola	cytosol	11.78	26.06
CDX69479	Canola	cytosol	9.87	25.94
CDY26488	Canola	cytosol	9.87	25.88
CDY56827	Canola	cytosol	11.49	25.16
CDX97668	Canola	cytosol	11.4	24.95
CDX96062	Canola	plastid	12.36	24.9
CDY01845	Canola	plastid	12.16	24.56
CDY28863	Canola	cytosol	11.88	23.85
CDY56518	Canola	cytosol, plastid	11.88	23.85
CDY39172	Canola	cytosol	11.21	23.78
CDY04192	Canola	cytosol	11.21	23.78
CDY13609	Canola	cytosol	11.88	23.44
CDX99731	Canola	cytosol, plastid	11.88	23.18
CDX83586	Canola	cytosol, plastid	11.69	23.06
CDY40988	Canola	cytosol, plastid	11.69	22.22
CDY14709	Canola	nucleus	11.97	18.09
CDY21840	Canola	endoplasmic reticulum, extracellular	11.97	15.13
CDY20113	Canola	endoplasmic reticulum, extracellular	11.78	14.91

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078GPX7	UniProt:A0A078GPX7
InterPro:BRX_N	InterPro:Brevis_radix_dom	EnsemblPlants:CDY28580	ProteinID:CDY28580	ProteinID:CDY28580.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00040550001	InterPro:IPR000408	InterPro:IPR009091
InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363
PFAM:PF08381	PFAM:PF13713	InterPro:PH-like_dom_sf	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012
PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF183	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens
SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0004EEA81B	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

BnaC02g19490DBnaC02g19490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPX7]

Coordinates

chrLK032222:+:483100..486993

Molecular Weight (calculated)

115050.0 Da

IEP (calculated)

8.481

GRAVY (calculated)

-0.448

Length

1044 amino acids

Sequence
(BLAST)

0001: MDYFCSYMLR MCSLSFHQPV FLCISHWKLI LFDQIQQAIT SLKKGSYLLK YGRRGKPKFC PFQLTSDEST LVWYSGKEEK QIKLSQVLRI VPGQRTATFK
0101: RYPRPEKEYQ SFSLICPDRS LDLICKDKDE AEVWVVGLKA LITRVKISKW KNTIKPEITS PECPTPHARR VSPFVSILDQ VTQPSTETST PNRLGKVFSD
0201: IVSITAPDNN NQTEANTLNP NLYCPISPGN VENPNSRFSM GGDLARLSLS SAVSTSSHGS YHEEFDALGD VFLWGEAISD GVLSGTGKTL HSTTEDALLP
0301: KALESTIVLD AQNIACGRCH AVLVTKQGEI FSWGEGTGGK LGHGLEKDTH QPKFISSVRG MNFKSLACGE FHTCSVTQSG DLYTWGDGTR NVDLLGHGSE
0401: SSCWIPKRVT GVLQGMHVSY VACGPWHTAV VASSGQLFTF GDGCFGALGH GDRTSSSVPR VVESLSEVRV MKVACGFWHT AAVVEVTNEA SDAELYSSCG
0501: QLFTWGDGEK GQLGHGDNAE KLLPECVTSL ADEKICQVAC GHSLTVSLTS NGHVFTMGSP AYGQLGNPTA KEKVPSRVEG DITETCVEEI ACGSHHVAVL
0601: TSKSEVYTWG KGLNGQLGHG TVENKREPAV VGFLKEKQVK AITCGSNFTA VICLNKWVPG SEHSLCAGCR NPFNFRRKRH NCYNCGLIFC KVCSSRKSLR
0701: AALAPDMNKP YRVCYGCFTK LKRSRELSPP PPTPRTRNLL NMRKSTDVSE KTPKLLSPHS RIASADSLVQ YGEGRHNKRD VKPEVSNSNV FALGSLQPAM
0801: SPLLRGSIAW PRISKNMIVK VPGSRVSSRT ASPVSVKSTS PRPSHEVTTD ESRHIKDSFG QEIVGLKEHV EQLTSKTQQL EEELEKTKRQ LRVVTAMAAD
0901: EAEENRSAKE VIRSLTTQLK EMSGRVPQKD DTSTNLHTEK ETTSENQTQT SSQTHIRSMV PHDSRSENNL SKSFVNGHRR HNEKAERVVQ DEPGVYLTLL
1001: SLPGGGNELK RVRFSRKQFT EEQAEKWWGE NGGKACERHN ILVS

Best Arabidopsis Sequence Match ( AT1G69710.2 )
(BLAST)

0001: MADSLRTSFS ERDVEQAITS LKKGSYLLKY GRRGKPKFCP FQLTSDESAL VWYSGKEEKQ IKLSQVLRIV PGQRTPTFKR YPRPEKEYQS FSLICPDRSL
0101: DLICKDKDEA EVWVVGLKSL ITRVKVSKWK TTIKPEITSA ECPTPHARRV SPFVTILDQV IQPSNETSTQ TRLGKVFSDI VAITAPPSNN NQTEASGNLF
0201: CPFSPTPANV ENSNLRFSTN DPFRLSLSSA VSTSSHGSYH EDFDALGDVF VWGESISDGV LSGTGNSLNS TTEDALLPKA LESTIVLDAQ NIACGKCHAV
0301: LVTKQGEIFS WGEGKGGKLG HGLETDAQKP KFISSVRGLG FKSLACGDFH TCAITQSGDL YSWGDGTHNV DLLGHGNESS CWIPKRVTGD LQGLYVSDVA
0401: CGPWHTAVVA SSGQLFTFGD GTFGALGHGD RRSTSVPREV ESLIGLIVTK VACGVWHTAA VVEVTNEASE AEVDSSRGQV FTWGDGEKGQ LGHGDNDTKL
0501: LPECVISLTN ENICQVACGH SLTVSRTSRG HVYTMGSTAY GQLGNPTAKG NFPERVEGDI VEASVEEIAC GSYHVAVLTS KSEIYTWGKG LNGQLGHGNV
0601: ENKREPAVVG FLREKQVKAI TCGSNFTAVI CVHKWVPGSE HSLCAGCRNP FNFRRKRHNC YNCGLVFCKV CSSRKSLRAA LAPDMNKPYR VCYGCFTKLK
0701: KSRESSPSTP TSRTRKLLNM RKSTDVSERD SLTQKFLSVN ARLSSADSSL HYSERRHHRR DLKPEVNNSN VFPSMNGSLQ PVGSPFSKGS TALPKIPKNM
0801: MVKIPGSGMS SRTTSPVSVK STSPRRSYEV AAAESKQLKD SFNQDMAGLK EQVEQLASKA HQLEEELEKT KRQLKVVTAM AADEAEENRS AKEVIRSLTT
0901: QLKEMAEKQS QKDSISTNSK HTDKEKSETV TQTSNQTHIR SMVSQDSQNE NNLTSKSFAN GHRKQNDKPE KVVQDEPGVY LTLLSLPGGG TELKRVRFSR
1001: KQFTEEQAEK WWGENGAKVC ERHNILVS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I287]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.