Factsheet for PGSC0003DMT400059356

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0057g00540.t01	Wine grape	cytosol, mitochondrion	12.12	67.2
VIT_01s0026g02170.t01	Wine grape	cytosol	52.38	59.47
KRH45886	Soybean	nucleus	52.38	56.72
KRG99112	Soybean	cytosol	51.89	54.59
GSMUA_Achr4P00510_001	Banana	cytosol	47.33	50.78
AT1G69710.1	Thale cress	cytosol	50.53	50.05
CDY44086	Canola	plasma membrane, vacuole	50.24	49.24
CDY28580	Canola	plasma membrane	49.85	49.23
TraesCS7A01G185400.1	Wheat	cytosol	45.49	46.34
TraesCS7B01G090600.1	Wheat	cytosol	45.78	46.27
TraesCS7D01G187100.3	Wheat	cytosol	45.49	45.94
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	50.44	44.91
HORVU7Hr1G038070.12	Barley	cytosol	40.74	44.54
PGSC0003DMT400002081	Potato	cytosol	45.97	42.1
PGSC0003DMT400001620	Potato	cytosol	16.2	41.75
PGSC0003DMT400034994	Potato	cytosol	40.16	40.0
PGSC0003DMT400043094	Potato	nucleus	36.57	35.04
GSMUA_Achr7P20980_001	Banana	cytosol	48.79	34.62
PGSC0003DMT400045467	Potato	cytosol	11.15	28.97
PGSC0003DMT400032945	Potato	extracellular	10.18	26.85
PGSC0003DMT400003726	Potato	cytosol	12.12	26.82
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	4.36	26.01
PGSC0003DMT400027900	Potato	cytosol	13.29	25.7
PGSC0003DMT400003817	Potato	cytosol	9.51	25.65
PGSC0003DMT400032346	Potato	plasma membrane	11.64	24.9

Protein Annotations

EntrezGene:102588539	Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:ABO93003
ProteinID:ABO93003.1	InterPro:BRX_N	InterPro:Brevis_radix_dom	ncoils:Coil	EMBL:EF514212	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083
InterPro:IPR013591	InterPro:IPR017455	UniProt:M1C455	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381
PFAM:PF13713	EnsemblPlantsGene:PGSC0003DMG401023061	PGSC:PGSC0003DMG401023061	EnsemblPlants:PGSC0003DMT400059356	InterPro:PH-like_dom_sf	PRINTS:PR00633
ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF325
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903
UniParc:UPI000296110F	RefSeq:XP_006363228.1	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Regulator of chromosome condensation RCC1 [Source:PGSC_GENE;Acc:PGSC0003DMG401023061]

Coordinates

chr5:+:5479001..5487596

Molecular Weight (calculated)

112268.0 Da

IEP (calculated)

8.471

GRAVY (calculated)

-0.441

Length

1031 amino acids

Sequence
(BLAST)

0001: MADFQRSSLA DRDTDQAIAA LKKGANLLKY GRRGKPKFCP FRLSNDESAV VWYHDKEEKQ LELCHVSRII PGQRTAIFQR YPRPEKEYQS FSLICNDRSL
0101: DLICKDKDEA EVWITGLKAI ITRGRSRRGK YDARSETVFS DSPHGQRVTT STSSIDQGDN QRTESLPQSR LGKAYADIIQ YTAAGKSPTL VETGSFNLSS
0201: LSAGAVDNSN ARSSTADTFR VSLSSALSSS SQGSCLEDFD NLGDVFIWGE GTGNGLLGGG KHRIGKSSGT RIDANTPKSL ESSVVLDVQN ISCGNRHAML
0301: VTKQGEAFSW GEEAGGRLGH GAETDVSHPK LIKNFKGMNV ELIACGEYHS CAVTSSGDLY TWGDGAKSSG LLGHRSEASH WIPKKVCGLM EGLRVSHVSC
0401: GPWHTALITS AGRLFTFGDG TFGALGHGDR SGCITPREVK TFNGLKTLKV ACGVWHTAAV VELMSGLDSR PSDAPSGTLF TWGDGDKGKL GHGDDKPRLA
0501: PECIAALVDK SFSQVACGYA MTVALTTAGR VYTMGSNVYG QLGCPLANGM SPICVEDYLV DSTVEEISCG SHHVAVLTSR TEVYTWGKGE NGQLGHGDCE
0601: NKCTPTLVDI LRDKQVKRIV CGSNFSAAIC VHNWALSADN SICFGCRIPF NFRRKRHNCY NCGFVFCKAC SSKKSLKASL APSTSKPYRV CDDCYDKLQK
0701: AIESEPFSRV PKVKAGNALY KASEQTDKES GFPLLVGHTS RLSSSDSFNR AQGRISRVDQ YENRASSFQN ENAPRESFSL SKSPISAFRV SKSLFSASLP
0801: STRVVPQSTS PLLGKASALW PAIPAPYPPV RTAEVVVDNL KPINDSLSQE VKQLKAQLEE LASKSQLLEA ELGRKTKQLK DATAKAAVEA EKRRAAKHVI
0901: KSLTAQLKEV TERLPEEQIS TSNLDFNVEQ TSFNRTGPSN GKCVTTTTLT ECSDSSNTVV SAKKSRGQKP ERMLQVEPGV YLYLISLPDG GNELKRVRFS
1001: RKCFSEDEAE KWWNENGQKI CEKYNITPEH V

Best Arabidopsis Sequence Match ( AT5G19420.1 )
(BLAST)

0001: MSRNGRMTPS DLSRAGPVTR DIEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESVLIW FSGKEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.