Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g089220.2.1 | Tomato | mitochondrion | 69.53 | 98.18 |
| VIT_14s0083g01020.t01 | Wine grape | cytosol | 82.4 | 80.33 |
| KRH45102 | Soybean | cytosol, nucleus, peroxisome | 79.18 | 77.85 |
| KRH01383 | Soybean | cytosol | 78.54 | 77.22 |
| CDY57523 | Canola | cytosol | 77.9 | 77.07 |
| CDY43240 | Canola | cytosol | 77.9 | 76.91 |
| Bra039169.1-P | Field mustard | cytosol | 77.68 | 76.86 |
| AT3G02300.2 | Thale cress | cytosol | 77.9 | 75.31 |
| TraesCS5D01G177900.1 | Wheat | cytosol | 77.25 | 75.0 |
| HORVU5Hr1G053180.5 | Barley | cytosol | 77.04 | 74.79 |
| TraesCS5B01G170800.1 | Wheat | cytosol | 77.04 | 74.79 |
| Zm00001d033172_P001 | Maize | cytosol | 76.39 | 74.17 |
| TraesCS5A01G173400.1 | Wheat | cytosol | 75.97 | 73.9 |
| GSMUA_Achr10P... | Banana | cytosol | 76.39 | 73.71 |
| OQU91404 | Sorghum | cytosol | 76.18 | 73.35 |
| Os03t0599600-01 | Rice | mitochondrion | 26.18 | 64.21 |
| PGSC0003DMT400032945 | Potato | extracellular | 19.1 | 22.76 |
| PGSC0003DMT400016865 | Potato | cytosol, extracellular, plastid | 8.15 | 21.97 |
| PGSC0003DMT400045467 | Potato | cytosol | 18.67 | 21.91 |
| PGSC0003DMT400003817 | Potato | cytosol | 17.6 | 21.47 |
| PGSC0003DMT400027900 | Potato | cytosol | 20.17 | 17.64 |
| PGSC0003DMT400032346 | Potato | plasma membrane | 17.38 | 16.8 |
| PGSC0003DMT400059356 | Potato | cytosol | 26.82 | 12.12 |
| PGSC0003DMT400034994 | Potato | cytosol | 25.54 | 11.5 |
| PGSC0003DMT400043094 | Potato | nucleus | 26.18 | 11.34 |
| PGSC0003DMT400002081 | Potato | cytosol | 25.32 | 10.48 |
| PGSC0003DMT400001620 | Potato | cytosol | 6.01 | 7.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400003726 | EnsemblPlantsGene:PGSC0003DMG400001467 | EntrezGene:102601190 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 |
| InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF321 | PFAM:PF00415 | PFscan:PS50012 |
| PGSC:PGSC0003DMG400001467 | PRINTS:PR00633 | RefSeq:XP_006338334.1 | RefSeq:XP_015162097.1 | ScanProsite:PS00626 | SEG:seg |
| SUPFAM:SSF50985 | UniParc:UPI0002966D6C | UniProt:M0ZM83 | MapMan:35.1 | : | : |
Description
Protein pim1 [Source:PGSC_GENE;Acc:PGSC0003DMG400001467]
Coordinates
chr2:+:45335415..45340717
Molecular Weight (calculated)
50080.2 Da
IEP (calculated)
6.498
GRAVY (calculated)
-0.203
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIDEILGVS RPVSLTNKSA IYVWGYNQSG QTGRRGEERS LRIPKQLPPE LFGCPAGGNS RWLDIACGRE HTAAVASDGS LFTWGANEFG QLGDGSENAR
101: KHPKKVKQLQ SEFVISVSCG AHCTVAIAEP RENDGSMSGR RLWVWGQNQG SNYPRLFWGA FSPSTVIRQV SCGAVHVVAL SEEGLLQAWG YNEYGQLGRG
201: VTSEGLQGPR VINGYAKFLD EAPELVKITQ VSCGEYHTAA ISEKGEVYTW GMGSVGQLGH CSLQSGDKEL LPRRVVSLDG ICIKEVACGG VHTCAVTAKG
301: ALYAWGGGQA GQLGVGPLNG FFSCKLNESE MMLRNIPVLV VPDGVQLVAC GHSHTLISAK DGRIHGWGYN CYGQAANEKS TYAWYPSPVD WCVGAVRKLA
401: AGGGHSAVLT DACSLKELCE FRLAETVNPS NASVVEDVAS RTGADALARL CERLREHYYN DDEFGL
101: KHPKKVKQLQ SEFVISVSCG AHCTVAIAEP RENDGSMSGR RLWVWGQNQG SNYPRLFWGA FSPSTVIRQV SCGAVHVVAL SEEGLLQAWG YNEYGQLGRG
201: VTSEGLQGPR VINGYAKFLD EAPELVKITQ VSCGEYHTAA ISEKGEVYTW GMGSVGQLGH CSLQSGDKEL LPRRVVSLDG ICIKEVACGG VHTCAVTAKG
301: ALYAWGGGQA GQLGVGPLNG FFSCKLNESE MMLRNIPVLV VPDGVQLVAC GHSHTLISAK DGRIHGWGYN CYGQAANEKS TYAWYPSPVD WCVGAVRKLA
401: AGGGHSAVLT DACSLKELCE FRLAETVNPS NASVVEDVAS RTGADALARL CERLREHYYN DDEFGL
001: MFSSLKGEFL KMDIGEIIGE VAPSVSIPTK SAIYVWGYNQ SGQTGRNEQE KLLRIPKQLP PELFGCPAGA NSRWLDISCG REHTAAVASD GSLFAWGANE
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR23]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.