Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57523 | Canola | cytosol | 99.15 | 99.36 |
| AT3G02300.2 | Thale cress | cytosol | 94.49 | 92.53 |
| PGSC0003DMT400003726 | Potato | cytosol | 76.91 | 77.9 |
| VIT_14s0083g01020.t01 | Wine grape | cytosol | 77.75 | 76.78 |
| Solyc02g089220.2.1 | Tomato | mitochondrion | 52.75 | 75.45 |
| KRH45102 | Soybean | cytosol, nucleus, peroxisome | 74.15 | 73.84 |
| KRH01383 | Soybean | cytosol | 73.52 | 73.21 |
| GSMUA_Achr10P... | Banana | cytosol | 72.25 | 70.6 |
| HORVU5Hr1G053180.5 | Barley | cytosol | 71.61 | 70.42 |
| TraesCS5D01G177900.1 | Wheat | cytosol | 71.61 | 70.42 |
| TraesCS5B01G170800.1 | Wheat | cytosol | 71.61 | 70.42 |
| Zm00001d033172_P001 | Maize | cytosol | 71.19 | 70.0 |
| TraesCS5A01G173400.1 | Wheat | cytosol | 70.97 | 69.94 |
| OQU91404 | Sorghum | cytosol | 70.97 | 69.21 |
| Os03t0599600-01 | Rice | mitochondrion | 24.36 | 60.53 |
| CDY69131 | Canola | cytosol | 16.95 | 24.92 |
| CDX69479 | Canola | cytosol | 20.34 | 24.18 |
| CDY34733 | Canola | cytosol | 16.74 | 23.58 |
| CDX81201 | Canola | cytosol | 21.82 | 23.41 |
| CDY31347 | Canola | cytosol | 21.61 | 23.39 |
| CDY26488 | Canola | cytosol | 19.7 | 23.37 |
| CDY43762 | Canola | cytosol | 21.19 | 23.36 |
| CDY46423 | Canola | cytosol | 18.64 | 23.22 |
| CDY60046 | Canola | cytosol | 22.03 | 23.21 |
| CDX84451 | Canola | cytosol | 21.4 | 22.65 |
| CDY39843 | Canola | cytosol | 18.86 | 22.03 |
| CDY16215 | Canola | cytosol | 17.8 | 21.76 |
| CDY40735 | Canola | mitochondrion | 19.7 | 21.28 |
| CDY44785 | Canola | mitochondrion | 19.49 | 21.25 |
| CDY01845 | Canola | plastid | 21.61 | 19.73 |
| CDX96062 | Canola | plastid | 21.61 | 19.69 |
| CDY02190 | Canola | mitochondrion | 18.43 | 19.64 |
| CDY51633 | Canola | mitochondrion | 18.43 | 19.59 |
| CDY04192 | Canola | cytosol | 20.13 | 19.31 |
| CDY39172 | Canola | cytosol | 20.13 | 19.31 |
| CDY56827 | Canola | cytosol | 19.28 | 19.08 |
| CDX97668 | Canola | cytosol | 19.07 | 18.87 |
| CDY56518 | Canola | cytosol, plastid | 20.76 | 18.85 |
| CDY28863 | Canola | cytosol | 20.76 | 18.85 |
| CDX83586 | Canola | cytosol, plastid | 20.13 | 17.96 |
| CDY13609 | Canola | cytosol | 20.13 | 17.96 |
| CDX99731 | Canola | cytosol, plastid | 19.92 | 17.57 |
| CDY40988 | Canola | cytosol, plastid | 19.7 | 16.94 |
| CDX87986 | Canola | cytosol | 6.14 | 14.08 |
| CDY66504 | Canola | cytosol | 24.15 | 13.82 |
| CDX77871 | Canola | cytosol | 25.64 | 12.75 |
| CDY48550 | Canola | cytosol | 26.27 | 12.65 |
| CDY31624 | Canola | cytosol | 26.27 | 12.61 |
| CDY21795 | Canola | cytosol | 25.42 | 12.54 |
| CDY14709 | Canola | nucleus | 18.22 | 12.45 |
| CDX87989 | Canola | cytosol | 26.27 | 12.38 |
| CDY47138 | Canola | cytosol | 27.33 | 12.32 |
| CDX97187 | Canola | nucleus | 27.54 | 12.29 |
| CDY11586 | Canola | cytosol | 27.33 | 12.25 |
| CDX69686 | Canola | nucleus | 27.75 | 12.24 |
| CDX85690 | Canola | nucleus | 26.91 | 11.87 |
| CDY70949 | Canola | cytosol | 8.9 | 11.86 |
| CDX87557 | Canola | cytosol | 26.91 | 11.84 |
| CDX91165 | Canola | nucleus | 26.91 | 11.84 |
| CDY44086 | Canola | plasma membrane, vacuole | 26.27 | 11.79 |
| CDY28580 | Canola | plasma membrane | 26.06 | 11.78 |
| CDX88324 | Canola | cytosol | 26.48 | 11.78 |
| CDY12764 | Canola | cytosol | 26.06 | 11.74 |
| CDX85076 | Canola | cytosol | 25.64 | 11.66 |
| CDX92532 | Canola | nucleus | 27.33 | 11.58 |
| CDX88891 | Canola | cytosol, mitochondrion, nucleus | 27.33 | 11.37 |
| CDY13998 | Canola | nucleus | 26.69 | 11.29 |
| CDY21840 | Canola | endoplasmic reticulum, extracellular | 19.7 | 11.26 |
| CDY20113 | Canola | endoplasmic reticulum, extracellular | 19.49 | 11.15 |
| CDX70876 | Canola | cytosol | 26.06 | 11.03 |
| CDY49416 | Canola | cytosol | 26.06 | 10.99 |
| CDX77534 | Canola | cytosol | 25.21 | 10.71 |
| CDX68076 | Canola | cytosol | 13.35 | 7.59 |
Protein Annotations
| EnsemblPlants:CDY43240 | EnsemblPlantsGene:GSBRNA2T00076268001 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF321 | PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 |
| ProteinID:CDY43240 | ProteinID:CDY43240.1 | ScanProsite:PS00626 | SEG:seg | SUPFAM:SSF50985 | UniParc:UPI0004EF47C2 |
| UniProt:A0A078HXI2 | MapMan:35.1 | : | : | : | : |
Description
BnaC05g48330DBnaC05g48330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXI2]
Coordinates
chrLK032550:-:45021..47940
Molecular Weight (calculated)
50622.8 Da
IEP (calculated)
5.465
GRAVY (calculated)
-0.152
Length
472 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIGEIIGEV AAPVSIPTKS AIYVWGYNQS GQTGRKGQES LLRIPKQLPP ELFGCPAAGA NSRWLDISCG REHTAAVASD GSLFTWGANE YGQLGDGTEV
101: GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRDNDGTLS KSRLWVWGQN QGSNLPRLFS GAFPANTAIR QVSCGTAHVV ALSEDGFLQA WGYNEQGQLG
201: RGVTCEGLQA PRVITSYAKF LDEAPELVKI TQVSCGEYHT AAVSETGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVAGL DGVSMKEVAC GGVHTCALSL
301: EGALYAWGGG QAGQLGLGPQ SGFLFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP VDWCVGQVRK
401: LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQF LDKDYPDGEE VY
101: GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRDNDGTLS KSRLWVWGQN QGSNLPRLFS GAFPANTAIR QVSCGTAHVV ALSEDGFLQA WGYNEQGQLG
201: RGVTCEGLQA PRVITSYAKF LDEAPELVKI TQVSCGEYHT AAVSETGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVAGL DGVSMKEVAC GGVHTCALSL
301: EGALYAWGGG QAGQLGLGPQ SGFLFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP VDWCVGQVRK
401: LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQF LDKDYPDGEE VY
001: MFSSLKGEFL KMDIGEIIGE VAPSVSIPTK SAIYVWGYNQ SGQTGRNEQE KLLRIPKQLP PELFGCPAGA NSRWLDISCG REHTAAVASD GSLFAWGANE
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR23]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.